Scaffold Ga0335036_0000582

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0000582
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33458
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (37.68%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001807	Metagenome / Metatranscriptome	631	Y
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F007026	Metagenome	359	Y
F019817	Metagenome	227	Y
F020341	Metagenome	224	Y
F022401	Metagenome	214	Y
F025487	Metagenome	201	Y
F059883	Metagenome	133	N
F097198	Metagenome / Metatranscriptome	104	N
F103180	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0000582_11309_11605	F020341	AGTAG	MKGFSSTKQHTRSSSYWVAVYAKDNDDEPIDIHKKILTYKPGQDKETLMTNYCNSIMKINRNIWEILVHQGPSEVPDTGDQIVIRVSREPFKGCSQLQ
Ga0335036_0000582_1281_1523	F019817	N/A	MQATATPALSINQRNLYAYYLNHKKKYGDTPCFVPKLPAQSSRLEQYLQALVRLEEYGLIRVDRSSANYTAWIMLPPKEQ
Ga0335036_0000582_17393_17587	F097198	N/A	MLQFEMGPEEAFWQEKMIRSIKECNSMSELKEMATLLTKIATMRQVAIKGLVKDAMDLMSNQIT
Ga0335036_0000582_17878_18819	F002333	N/A	MSTQTQLELNAAQAAIYTRSNIRRAFQDFDDTEVAGIYLRGDDCLVVRRDGSEQAYNRELIKVAHTNYTHRLKDFFSYLGPNYRGPSVWHNNAYVLFKGWNYSHALGHLTSNAKLQAHWADKFIHVSDTNKVLHLLQSDQTDIGHLVAPDGLRLPNRPIDFDSDMEADQSTPVVGEPWCSCGSYQRQLSNVSDFASEIEGFKPWCIHLSWFNKYRELLCKRTEARNASPSGTPEKCVSWWYAPPADHISDGRFVLLYTNSGAQAPLTHWRTYKPKEIFTQHDAWDLFFNMMEAGYVPFPGTALPQLKSAIKKQ
Ga0335036_0000582_19247_19660	F002738	N/A	MHSEKLVIAMSIDTYGLPSEQYTEFFHKNIRAAAKLYLDTCNILSSEGVGNVDFKTVSEMYQEAVYTTNDDCRRYQKSNNPEALKDTDLLGIYPSREELLAEIQAVNTKVEALNDYVAELIAVTTKGLTGISDLLVD
Ga0335036_0000582_21957_22307	F022401	N/A	MEHPHEPVDAIKGWQDWYKKHRIVAQMDEPLVTKDSRENMHDTTDAVDSAAKVMWMSKAQEHFADTLAEYQYELSGKDLYKAFYKAAYENAEAARKEYEKSKELLDMLRYNNLTQD
Ga0335036_0000582_2378_2665	F007026	N/A	MEQAKKYPEYSWTKNEYHQLQLVVDALKAICAREDKRHQMDEHLDPHMRNIIDEVIGMLEDEIDYDPTPNEPGEPPITADEMHTAAWKEHLAMHS
Ga0335036_0000582_3067_3264	F001120	N/A	MTKKSPISFDRTIHGVNITEHGIKSVSKQIKLGPFQLTVNANPNGIKGSVSIPGTGLSIPNIKLI
Ga0335036_0000582_377_601	F059883	N/A	MGALMDQTEDNKRYHLIINVDEKYAIVNALAFYHAHHTQGALMDEDEREQYMLAFQEDGPTFVDSLATKVANTF
Ga0335036_0000582_3928_4170	F001807	GGAG	MTVLAIEDTYFTQTHVTVTAVVDDMRLLYRATRFDPEEWAPALCTTTIELDPGEPIPFDEDGFCSYLDQLDPQWQLVDCD
Ga0335036_0000582_4610_4822	F103180	N/A	MIIGFSIEFKKFYFVLRGPKGRVYLVTGFAKHLPVPSRWRMPASTLDQCIGTWPGDETDEELLDTLRSIR
Ga0335036_0000582_7375_7671	F025487	GGGGG	MTNDSIDLDLVDKTIALIPEQAWTQVRQAIVTALVDNMPGFALEKLTGTYDDFDRAEEILYNYYQLPELRHELIADAFKIMGPANCLELLNSLDLKQS