Scaffold Ga0335036_0000173

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0000173
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58384
• Total Scaffold Genes: 99
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (39.39%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F012964	Metagenome	275	Y
F013517	Metagenome / Metatranscriptome	270	Y
F020160	Metagenome	225	Y
F020341	Metagenome	224	Y
F022401	Metagenome	214	Y
F033011	Metagenome	178	Y
F043890	Metagenome / Metatranscriptome	155	Y
F056552	Metagenome	137	Y
F067537	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0000173_11058_11249	F043890	N/A	MCNPNSIEKLQINCIEEEDGSMTIHIEWDENHPDLQWWTNLGPEGQETFMIDALQKACDCYVD
Ga0335036_0000173_11239_11625	F002738	N/A	MSIDTYGLPSEQYVKFFKDNVRFAARLYLDTCNILSAEGAGNVDFKTVLDMYQEAVYATNDDCRKYQKANNPEAIKDTDLFGIYPSREDMMEEIKAVSAKVEALTDYVTELVKVTTKGLEGIAENLVD
Ga0335036_0000173_11708_11821	F013517	N/A	MFESLFAAVLPVMKELLWAAAGMALTFVMTKLTHSWS
Ga0335036_0000173_12008_12727	F001018	N/A	MTQITQVKLEQLSVLKLYEHYGALERSLPLLTPESQELAKAELEACAHLRSEKVDRIYYAMAAHEDALERVKKEGDLLAQAKRHHESQLRSLKNLLNYLRRVLPLDSNKITGRNYQFTLVRKKELTVEVTSDPEFWHTAERELYCIEETVTTTKQVVVRSMSGEVLSTRTEPKTVTKILPNLDAIRSAYQEGRQLPTGVKVVQEYAVRSKRIFAEPRVELVSSEYPDEFLREDSSADES
Ga0335036_0000173_14017_14367	F022401	N/A	MEHPHEPVDAIKEWQDWYKKHRIVAQMDEPLVTKDSRENLHNTTDAVESAAKAMWMSKAQEHFADTLAEYQYELSGKDLYKAFYKAAYENAEGARIEYEKTKELLDMLRYGQVGQD
Ga0335036_0000173_1606_1899	F067537	N/A	MKRQFDYKIGDRVAERPKVHGLFTKNEDVLQRISQYRTQRYGEVVGINYKPNARGAKQKFLLIRWDNRTSATEHAVMRICPVSELERLTKEVIVPGE
Ga0335036_0000173_22475_22636	F033011	N/A	MTANLTRFYFDFDEECRTGCFVNLAYKDVETIEADEYERELQSQDVPYTRVDL
Ga0335036_0000173_24187_24372	F020160	GGA	MTRYNPNGKMECRKRLAWTIACEQAVVTKEDAVTIYNRLMDEFNGMDKRNKYKQTESNKS
Ga0335036_0000173_3149_3445	F020341	N/A	MKGFSTTKQKFNSSAYWVAVYSKDNDDEPLGIHKKVLSYKPGQDKELLMIRYCNSIMKINQNIWEILVHQGPDDTPDSGDQIVLRLSREKFKGSAQVN
Ga0335036_0000173_38563_38871	F012964	N/A	MEEQIPPSQLPMQQTLEGQITPEMLAEMKARAMELAIQQTVPQRLPIETSLEALPQVVYVRRNLTVAELLLVLLLSCGIVTGIQGLWYLGTNLLPRLEIRVR
Ga0335036_0000173_8002_8241	F056552	N/A	MTSTHDQFTLLYEDEHTKLLYEFKALVADDVINHLVDFLKGCGYMESSIYECMRESSEAYFDSLSTQQYVMKWDKPDPE
Ga0335036_0000173_9912_10847	F002333	N/A	METITELNAAQAAIYTRTNLSRAFEDFDDTDIGGIYLRGDDCIVVRRDGSEQTYDRELIKTSFNNYTYRLKDFFSYLGPNYRGPSVWHNNAYILFKGWNYSHSLGHLSSNAKLQAHWADKFIHVSDTNKVLHLLQSDQTDLGHLVAPDGLRLPNRPIDLDSDMEADQSTPVMGEPWCSCGSYQRQLSNVSDFASELQGFKPWCIHLTWFNKYRELLCKRTEARNASPSGTPEKCVAWWYAPPADHISNGRFVLLYTNSGAQAPLSHWRTYKPKDVFTQHDAWDLFFNMMEAGYVPFPGTALPQLKSALKKQ