NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0000173

Scaffold Ga0335036_0000173


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0000173 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)58384
Total Scaffold Genes99 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (39.39%)
Novel Protein Genes12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Associated Families12

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001018Metagenome / Metatranscriptome804Y
F002333Metagenome569Y
F002738Metagenome / Metatranscriptome533Y
F012964Metagenome275Y
F013517Metagenome / Metatranscriptome270Y
F020160Metagenome225Y
F020341Metagenome224Y
F022401Metagenome214Y
F033011Metagenome178Y
F043890Metagenome / Metatranscriptome155Y
F056552Metagenome137Y
F067537Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0000173_11058_11249F043890N/AMCNPNSIEKLQINCIEEEDGSMTIHIEWDENHPDLQWWTNLGPEGQETFMIDALQKACDCYVD
Ga0335036_0000173_11239_11625F002738N/AMSIDTYGLPSEQYVKFFKDNVRFAARLYLDTCNILSAEGAGNVDFKTVLDMYQEAVYATNDDCRKYQKANNPEAIKDTDLFGIYPSREDMMEEIKAVSAKVEALTDYVTELVKVTTKGLEGIAENLVD
Ga0335036_0000173_11708_11821F013517N/AMFESLFAAVLPVMKELLWAAAGMALTFVMTKLTHSWS
Ga0335036_0000173_12008_12727F001018N/AMTQITQVKLEQLSVLKLYEHYGALERSLPLLTPESQELAKAELEACAHLRSEKVDRIYYAMAAHEDALERVKKEGDLLAQAKRHHESQLRSLKNLLNYLRRVLPLDSNKITGRNYQFTLVRKKELTVEVTSDPEFWHTAERELYCIEETVTTTKQVVVRSMSGEVLSTRTEPKTVTKILPNLDAIRSAYQEGRQLPTGVKVVQEYAVRSKRIFAEPRVELVSSEYPDEFLREDSSADES
Ga0335036_0000173_14017_14367F022401N/AMEHPHEPVDAIKEWQDWYKKHRIVAQMDEPLVTKDSRENLHNTTDAVESAAKAMWMSKAQEHFADTLAEYQYELSGKDLYKAFYKAAYENAEGARIEYEKTKELLDMLRYGQVGQD
Ga0335036_0000173_1606_1899F067537N/AMKRQFDYKIGDRVAERPKVHGLFTKNEDVLQRISQYRTQRYGEVVGINYKPNARGAKQKFLLIRWDNRTSATEHAVMRICPVSELERLTKEVIVPGE
Ga0335036_0000173_22475_22636F033011N/AMTANLTRFYFDFDEECRTGCFVNLAYKDVETIEADEYERELQSQDVPYTRVDL
Ga0335036_0000173_24187_24372F020160GGAMTRYNPNGKMECRKRLAWTIACEQAVVTKEDAVTIYNRLMDEFNGMDKRNKYKQTESNKS
Ga0335036_0000173_3149_3445F020341N/AMKGFSTTKQKFNSSAYWVAVYSKDNDDEPLGIHKKVLSYKPGQDKELLMIRYCNSIMKINQNIWEILVHQGPDDTPDSGDQIVLRLSREKFKGSAQVN
Ga0335036_0000173_38563_38871F012964N/AMEEQIPPSQLPMQQTLEGQITPEMLAEMKARAMELAIQQTVPQRLPIETSLEALPQVVYVRRNLTVAELLLVLLLSCGIVTGIQGLWYLGTNLLPRLEIRVR
Ga0335036_0000173_8002_8241F056552N/AMTSTHDQFTLLYEDEHTKLLYEFKALVADDVINHLVDFLKGCGYMESSIYECMRESSEAYFDSLSTQQYVMKWDKPDPE
Ga0335036_0000173_9912_10847F002333N/AMETITELNAAQAAIYTRTNLSRAFEDFDDTDIGGIYLRGDDCIVVRRDGSEQTYDRELIKTSFNNYTYRLKDFFSYLGPNYRGPSVWHNNAYILFKGWNYSHSLGHLSSNAKLQAHWADKFIHVSDTNKVLHLLQSDQTDLGHLVAPDGLRLPNRPIDLDSDMEADQSTPVMGEPWCSCGSYQRQLSNVSDFASELQGFKPWCIHLTWFNKYRELLCKRTEARNASPSGTPEKCVAWWYAPPADHISNGRFVLLYTNSGAQAPLSHWRTYKPKDVFTQHDAWDLFFNMMEAGYVPFPGTALPQLKSALKKQ

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