NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335035_0018329

Scaffold Ga0335035_0018329


Overview

Basic Information
Taxon OID3300034105 Open in IMG/M
Scaffold IDGa0335035_0018329 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4684
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000166Metagenome / Metatranscriptome1810Y
F046906Metagenome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0335035_0018329_2600_2863F046906N/AMFMYDQKTDSQNKETSDRSERKANPLGDTHGKRNPVHLCIGYGNQLYAWPLGKRSGQRRDIQDDFTRFFYTYRRHDWLPEWYQADAK
Ga0335035_0018329_3856_4230F000166AGGMSNIPTPEQSQLFAQSVRKWQQVLSLGDWRIEKGSKPAKSAMASVEFTPAARLAVYRLGDFGAERVTPESLDQTALHELLHVFLHDLMTVAQDPKSSQDEIEMQEHRVINLLEKLLFKDSNGRS
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