Basic Information | |
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Taxon OID | 3300034105 Open in IMG/M |
Scaffold ID | Ga0335035_0016226 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4977 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (76.92%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000821 | Metagenome / Metatranscriptome | 876 | Y |
F027417 | Metagenome | 194 | Y |
F053900 | Metagenome | 140 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0335035_0016226_2288_2560 | F027417 | GGAG | MSYDYRVTFVTDYLTITTNVCLELDDTTGNLSDEAYEQATINGMNNIEDEIGKIDETVINDITVTLLLDDEEIELGNFGEFPPVHVEVIE |
Ga0335035_0016226_2893_3051 | F000821 | AGGAGG | MNREYLEAKVDLCLNQAEIDIKQQEIARAIKNLERANSALSRIFNLEEDENE |
Ga0335035_0016226_4635_4976 | F053900 | N/A | SATLGQLLPFVIASVIDGTVLEQAQEMIKDGQPKGSSSPAEGGNLLANLIDIKNGFLKLDQEDQTLLRLRHHESFTLQQIAQFLECAVSTADRRCDKSLRRLQDNLGGISPWQ |
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