Scaffold Ga0335035_0002442

Overview

Basic Information

• Taxon OID: 3300034105
• Scaffold ID: Ga0335035_0002442
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13166
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (10.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006590	Metagenome / Metatranscriptome	369	N
F025030	Metagenome / Metatranscriptome	203	Y
F101173	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335035_0002442_11713_12081	F006590	N/A	MKTITIANTSIPIKFGMYVLGTFLRERKLKLSDLSLLGEDLLLALELAFAGVENGYKAKGEKCPYTLQSFCDLVDTDMGGITRIMEMISNEISPPEDDTQKNVVAKVENSHLNTSNAFVSEF
Ga0335035_0002442_12529_12780	F025030	N/A	MKLRLLKEWNGKEPGKVGVFLSEYGEQMIKDGIAELLDESFVVEQMPQKEQVQQDPIYIPIPVPNSYFADEADEEKIIKQKNK
Ga0335035_0002442_7143_9380	F101173	AGTAG	MAIRFSTTVYNEKSRKITVSIKDSSFSGTVKTFDTLSLGIQYDSESQQGQERFTPIIGSRCSLSLLINNEDLQTLLLDIGLAVEGRFTMELTAYEDDNTTVSFKWYGYIVTDLVEFEDVPLVIGYQAQISAIDGLGWLKTLDYKSAVGPYNGQDTVVQHILNCLNQLDFVQENLVANSLPVLHTIFNWHENSTVYNADNDYAYNTVIQHRAFYHRDTKNNYIYQSCYDVIKKICQTFGARLIFSGNQYWFIQVNEYANNPASHRYFKYSGFGVQSVGTFSADLTISNIQTNLVESDLMRLSGGKWTYYPALKNVVIRYNHFAKQNLLAGVEYNYATNTTPVITTTPTLDASNPDARLSYTGILGFYAQALNPANFEPYQFVFAVKVVSIINSFPLQGFESANWTLGSGWLIDNNILSGVLITTDAYYTTFSVVNGRKYYIKIKVDIDNAGSLRLRLGGVTKTITESGDYEYVIIATNTDTLKFDSVSSPRFTGKIKSLEVKQENKYLKRGVTYTNGFNFQLEAASWETSFSEFEFNTETINADAAFVAYKTITFDTLDIPDTAEYIWEMRLKEMRNEAGTNIISNFAVSYLLSNNYLEFLPTGAVSGQSDILEYGSDNDDKSSTVFSLDTYIGDGPSKTTDGALKVKNSYTGGVYINSNTWEVGAGTGFGFNKITQLLVNEVIRGQLTPKLRMVDMPFQNLSVDNPYLPHKVIEYSSGYYVFERGSLDLKTEIWQGDYFKIELDA