Scaffold Ga0335031_0221353

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335031_0221353

Scaffold Ga0335031_0221353

Overview

Basic Information
Taxon OID	3300034104 Open in IMG/M
Scaffold ID	Ga0335031_0221353 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1270
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F011484	Metagenome	290	Y
F017469	Metagenome / Metatranscriptome	240	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0221353_1145_1270	F017469	GGAGG	MKTICQFCGWEVSKPDWYNDHNGKLICDNCLMDSATEREKEK
Ga0335031_0221353_467_640	F011484	AGGAG	MRDLEQFLNTEAEWVLERLSTGTEVNDRNYYQGRLDQLAQVRRFLGQPQIMREKASK
Ga0335031_0221353_859_1002	F006842	AGGAG	MKATPVMCGDCLILLSDCAHGANYLQELKTSAERLIQLAKEREELTK

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