NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335031_0123733

Scaffold Ga0335031_0123733


Overview

Basic Information
Taxon OID3300034104 Open in IMG/M
Scaffold IDGa0335031_0123733 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1807
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021112Metagenome220Y
F047674Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0335031_0123733_276_425F047674AGGAMDTDTETIAEIDEALAHAIASRKTTIDSKKHLVNKFIDDLLDSRLELSK
Ga0335031_0123733_539_1207F021112N/ALIELPALQVKAGEYLVPGRSGSGSPSTERSIGINVSALDFSMATELIAILHGWEQIIRTERQLTPPALMVKESTTTKEVEATCQFHIAHLDWIVNQDWAKDFANEVKELHSKGMAAAKQFKEQPRRIPCPTDDCKKFVVIDVENLDKGVTCHGCKNSWSVIRLIALAMSNPNRRFYLDIEAIALWLGITQRAVYKIIKGNQIPQKGKLFDLAAIIKMRDKTN

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