Basic Information | |
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Taxon OID | 3300034104 Open in IMG/M |
Scaffold ID | Ga0335031_0080160 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2321 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006587 | Metagenome | 369 | Y |
F012016 | Metagenome | 284 | Y |
F100665 | Metagenome | 102 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335031_0080160_1496_1699 | F100665 | AGGAG | MAKPYIKVVSIKDTNQGDCKLTLDMNQAGREVILQAGIQKALSDYMVANTKKLSFWNKLQICWNIFK |
Ga0335031_0080160_1700_1909 | F006587 | GGAGG | MDSKKYDGTGFVLVGLIVGCCITWGIMKYSQTQTKYKMNLKCIQGELYEEVRTNMFVKSHLECFEQRSF |
Ga0335031_0080160_1899_2165 | F012016 | AGGCGG | MQETRKDELPRQPDGWWTREFNANNDLVFSAFTQFRPTEISWVRDLPNKKHYLIIAPFYVNEAQAEKITGVKSYKESTKRLMEAYNGL |
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