NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335031_0052611

Scaffold Ga0335031_0052611


Overview

Basic Information
Taxon OID3300034104 Open in IMG/M
Scaffold IDGa0335031_0052611 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2933
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024819Metagenome / Metatranscriptome204Y
F068608Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0335031_0052611_1820_2047F024819AGAAGMSKFNDAINKAMRVLAEELKDSESQICTGWVLVSEWSDFEGTRYLMTDVSENMNPWLAKGMLLSAEEYSYIPEEK
Ga0335031_0052611_2047_2550F068608AGGAGMVSGGYRPDASQNNPMSVSGNGGNGQSGKFVAEKVAKATQLRMSGLPQGENTAMAEQIQQGGGVKTTASAANPAPRMPRGEGLAEILGALEPLDSEPAEFRPISDGADIGEGRGSEVLPKSLNPDMRQIENIELIKRYRNDLVNAARMPGAPDSYKRMVNALLREIL

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