Scaffold Ga0335031_0024606

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0024606
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4408
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022399	Metagenome	214	Y
F024101	Metagenome	207	Y
F093851	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0024606_4033_4299	F022399	AGGTGG	MDKKYKEIYSKNGLEVFVNPEDYWADYKVRLNGYHAKTFKGETAWMDVTRFVHGQAMEFYDFDVDGIHRQWKTDLIEEIERRFSDAGL
Ga0335031_0024606_4286_4408	F093851	AGGAG	MQDYKYLDTDLDDMIYALDSVLTTINSDDDPWLYNNTWRAM
Ga0335031_0024606_44_313	F024101	GGAG	VPKEKPIHKMVEEVFDKDVNADLLDELVEERTFIVNTLKKFIEHDEIWVQLVDNMEARKNFLTNLQMLFLNEIENSTLIELATTKWGND