Scaffold Ga0335031_0020380

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0020380
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4863
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048257	Metagenome	148	N
F063343	Metagenome	129	Y
F067530	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0020380_2744_3160	F048257	N/A	MTAFPSSVAARQCLRGEGCSESVYWVLRRTLLINSGLRFAGERKNTLKKSFYGALAVQAFVMAWTATHMDEPVASLPSGETAIGGNSFEILGTYLTRSVIVGTGLWLGGERKNLLRNTLAGTAMIQATVLLWAQGKEL
Ga0335031_0020380_3157_4029	F063343	N/A	MNYLILLGILGLFILGNKVRTNWVSGIKSTLIKLMIPGADRRLFSGFTQSTFSWVRNPASWVRVFNWTGVAAGINGLGGVGGGTLISRRHVLLANHVPYPARPFDIFFANASSRTFTYKVTNIQQVGDTDIAIGTLDRDADPSLNVYRVLPDNWTQYIANKVIQPTATFIAVGLTAPTQAFVLPVLYSGQERKVSTADVVSILSGLAGVNIPAFEVARAFGDPIIGGDSGNPIFAMLGDELVLLGAWYTGPDRGFTVGTFPWLITHRGAIEKIMGQKLRVADMSGLDRIA
Ga0335031_0020380_4697_4861	F067530	N/A	DPATANALITALEVARRQGDFAVARTAVVIISELIRQDEEFKKLNPPVQIQTAE