NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335031_0002530

Scaffold Ga0335031_0002530


Overview

Basic Information
Taxon OID3300034104 Open in IMG/M
Scaffold IDGa0335031_0002530 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13741
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (89.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034467Metagenome174Y
F034855Metagenome / Metatranscriptome173Y
F080867Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0335031_0002530_10874_11038F034467AGGAGMKELKYSSKAIPLRGCNDPKFKWVSAAQTDIRRTFRKARLLIRITKGAAYESRT
Ga0335031_0002530_11063_11929F080867AGGAGMNTLSLSNVVMGEDLKKSFDKEGLRMKGVYGMLDPVVSRLASLNPLWTFVIVSSAHDSGYDRVASGFTVKLDGEELGQIGLSYMGSKGRVITISNDRIGKGRTRSDSYRTTDADKAVLTAKKMFGKMNPTERIQKAKDAAERVVTRASWNKERERGNLKGTVQGAILKWAETNGYEMFLEFIEKEAVLSTKKSVTQSLQKLEVLDTEMKTIERVQEEFGRNQTALVVKDSGKYLVKIGDKVDLYDDNTLPQDMRMKVGMLKLVEDEQYLTDVGCKVTSEIFVLLVDET
Ga0335031_0002530_9195_9533F034855GGAGMSERMDNALALADKCWSKASKTNPEFVERYLELAEQLLVSKPVVLGDEFREHCGKNLLFRPAELHPNVWVSGVRTLSTLGWIAHNGYTTPTKSHNHMPSVSVWKSMIYGNDT
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