NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335031_0001040

Scaffold Ga0335031_0001040


Overview

Basic Information
Taxon OID3300034104 Open in IMG/M
Scaffold IDGa0335031_0001040 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21264
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (14.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000716Metagenome / Metatranscriptome923Y
F012010Metagenome / Metatranscriptome284Y
F064715Metagenome / Metatranscriptome128Y
F071153Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0335031_0001040_15724_16077F071153N/AMFTGKFIKKDGKLTYADPKDKLAYDIFISKLEEGQIIDMYLDLASVDHSKAQLAKVHACIRELAKESGYSFDDMKLLIKQNAGLEGKSFAECSKEQIALAIESCIQIGRENFNLSLG
Ga0335031_0001040_17111_17698F012010N/AMTDIFTRLIQEGLTPNTYYVLHCIREKIVPHKSVNKELECKRLQTDHWLTENLELTSKSLIFMEEINGYFKRTKKKTSQDLMGQDFVRNIEKYVEIFPNKKLSSGKYARVNAKNLEAPFRWFFENYDYDWEEIMKATEKYVDEFSIRRYEFMRTAQYFIRKQNIDKSFESDLATYCEIIRSGDDEEQVYFSEKVV
Ga0335031_0001040_5375_5875F000716N/AMIKKMYKMEKLKQEIKNYQLNAGKTYMQYETDRYSQYQNYLYKRALYGLNALSEQELATMCSKKKQRIVNVYKRAQVVINKLKQEFTIRYTNFIFKTLFPNSPLTDSLLACTEFDDKFKNTLTFKDLDITKEDIITIFIAEGILPKNFLSLNKDPNQLPKLKNQKA
Ga0335031_0001040_6902_7081F064715N/AMSDFDKKQIKEVADKSEDVGNTLYDEYKKNKKLETAKVSIAAFRNTLYANSLLIKAEKL

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.