Scaffold Ga0335031_0000299

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0000299
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39776
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (38.03%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005388	Metagenome / Metatranscriptome	402	N
F007361	Metagenome / Metatranscriptome	352	N
F012111	Metagenome	283	N
F082111	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0000299_3232_5022	F012111	N/A	MPSEVDKNQVAFAVNANFRQGFVSCRPGFVQKDYDLCVTITADNDQITADQTNVTADGWSEDCYGPQSLTGTFQCALPYIADDGRTFILMLISGKVWLYNCLQNNAQSLTTSPDLENPSNLLDGWMVQAENFVVIQDGFSRPLIFNGTSLRRASDDEIKTGKVMAYVNGRIWYALPDGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGDPDTSLGQGPLLVFTPRYVFSVQAPVDRDVWKNLNYPIQAISLLTSGALGSRSAITINGDVFYRAVDGVRSFIIARRSFTDWGNTPISSEMLNVIENDQTNLLWASSAVVFDNRLLMTCQPRYNAEGVIHKALAVLDFDLITSMRKKFPPAWSGIWTGLDVLQIVKTENAYGDQCFCIARGSDDSIQIWEVTKADKFDNNIPDGKKEIEWQVQTRAYNFEVPFGLKRLDSGDLFIDSLEGDVSFNVTYRPDQYPGWIEWTDFSECATTTQCFDLCPIQNFKPQYRPKMRFPTPSDAPCNETISTPARNLYEVQVAMNIIGYCRIKSLRVHAYDIQEPSVGDCRTVFPACTPISACDINPLTYTSESVNP
Ga0335031_0000299_32559_33806	F005388	N/A	MSCPNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGNPGDNGGACDVTYSEVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNTFAKFAIKAVADSSFTQVETIPSGVNEFPWIQTGSAGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPIFPLYIGLEASQRIAQNNPAFREDLRQADMGSGSGAELLKRIGANRVIKNFRHVPNLFPPRFTYAGGKYTLVQPFTSASGTKGTVFSVNPSWTTAPFEAAFIVTPYVFKSHIVRPVNRVGDLSWMPTNYMGEWQWVTGAYKFNTDCEDPLEKKGQHYAEFVHASEPVFTNQGMTIIFRRCTGALTQIICS
Ga0335031_0000299_38651_39775	F082111	N/A	SNGQTPDFGSSFIDAFKAIGADNATPAEKPAVTAAPQKTDNTSPKLSKSEMDIERMFSKKTAAEPTAAAPAAPDDADIPETIKSTKAADAFRKIKEEKAQLAKQLDELKAGKSTNPQFESQLKTLQEERDALSERVRLLDIERHPDFIKKYEGKITGVFDSVKNLVGTDGERLVSLLKSPDSDYRNSQIDDIVEGLSPSKKAKLGALIVKYDEINGERASELTEAKADYDAVISKYKQDNEEGTKAALESANKTWQKVSTDARSLEIFEPRENDDEWNTELNGRLSLAQQIFNGENSEEDLAKAALWAAAAPKYRELLYAQVEVNKRLQAELSKYRGSEPGVTSKATSGGYRPANANAAKSEDFVASVMKSLGR
Ga0335031_0000299_7270_7815	F007361	N/A	MKGKLFQICGLPRFGSAFMSVLFSLETDCLGLHEQGATDPNWKQSIEEYRTRYMYVADCSTYGYLPKAVVHDSIKVYVKKDAEASAKECTERFGYEVHLPSVQALREYADAWASLHGVMTIEENELFKVDTLRRVWVHCFQNERAFPEEKAARLVTMNIQRHEPEKVFSIENGNRLVKEV