Basic Information | |
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Taxon OID | 3300034104 Open in IMG/M |
Scaffold ID | Ga0335031_0000020 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 205907 |
Total Scaffold Genes | 272 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 189 (69.49%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001360 | Metagenome / Metatranscriptome | 714 | Y |
F004789 | Metagenome / Metatranscriptome | 423 | Y |
F007028 | Metagenome / Metatranscriptome | 359 | Y |
F007583 | Metagenome / Metatranscriptome | 348 | Y |
F067665 | Metagenome / Metatranscriptome | 125 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335031_0000020_129025_129393 | F004789 | AGGAG | VTIKGTYKNPTERPCWTFCPSCNRCQDKGRYSACRGCSGRYDPEGVTDPDIDDYCDCKNGNLRWKTKQGKLIMTRFKTNPFKGTVKYEKKSEDERDWDSYLADMREKMNDPNWNPITIVDED |
Ga0335031_0000020_134284_134604 | F007028 | AGGA | MPKVSKSAFEQSTDSPIEQVVNLMAQEISISTNPVFICGVNRKINIGNFENIDVYAGITIPLSNIDPSDREALSEAIQAAAADGFAMVSRETGERYTLIKESQQGK |
Ga0335031_0000020_168472_169086 | F067665 | AGGAG | MTIEENVEEFLESLDPSSDDKPKYANTLYKKWFRSKTQSGFVAIKPWFEGMKFSVDIGRTNQSGKLESNTNCFVDAVDFSAYLRSIANGSAVANFPANDRLSLPHPESFVSYGGAMTSAGHPISRIFKCQYWTNGDAIDVNNFVWKAGHFKARKSDTGAFIPDMKSPLSVDSIKVSRQDIASISYLCDLSLVSFVSNNTEWYDA |
Ga0335031_0000020_170895_171146 | F007583 | AGGAG | MELNSKQNTTSSSEGVANVRYGVYNQPAPVSGKSIADVRQQFSKLWGISGDAIAYKGKDKLDENYIIQPGDNVEFHRRAGEKG |
Ga0335031_0000020_28474_29244 | F001360 | AGGAG | MSLAKFRKVGTKTGSGRFVVSEGIAPAAYLLPHVGLPTWYADSEDDRFEIVIPKGTILSVVADANGDARVVPANGTSSSVTWGDVTSGWNPLDGATPSYSSGATDTVAVAARSIPVGVAQYDLYRPFDKGTSQGAGFITHGYVEYPMVEGVNANVTVGSLVRADHMGRPVLAAVTDFLASSSVYSYLQVGKVVEVETFATNYDDGLLSYMQLPSDPGALKTVFELTRSGAFSGKLGIRSNLDVHNVKGAFRVNLTL |
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