Scaffold Ga0335031_0000020

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0000020
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 205907
• Total Scaffold Genes: 272
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 189 (69.49%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001360	Metagenome / Metatranscriptome	714	Y
F004789	Metagenome / Metatranscriptome	423	Y
F007028	Metagenome / Metatranscriptome	359	Y
F007583	Metagenome / Metatranscriptome	348	Y
F067665	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0000020_129025_129393	F004789	AGGAG	VTIKGTYKNPTERPCWTFCPSCNRCQDKGRYSACRGCSGRYDPEGVTDPDIDDYCDCKNGNLRWKTKQGKLIMTRFKTNPFKGTVKYEKKSEDERDWDSYLADMREKMNDPNWNPITIVDED
Ga0335031_0000020_134284_134604	F007028	AGGA	MPKVSKSAFEQSTDSPIEQVVNLMAQEISISTNPVFICGVNRKINIGNFENIDVYAGITIPLSNIDPSDREALSEAIQAAAADGFAMVSRETGERYTLIKESQQGK
Ga0335031_0000020_168472_169086	F067665	AGGAG	MTIEENVEEFLESLDPSSDDKPKYANTLYKKWFRSKTQSGFVAIKPWFEGMKFSVDIGRTNQSGKLESNTNCFVDAVDFSAYLRSIANGSAVANFPANDRLSLPHPESFVSYGGAMTSAGHPISRIFKCQYWTNGDAIDVNNFVWKAGHFKARKSDTGAFIPDMKSPLSVDSIKVSRQDIASISYLCDLSLVSFVSNNTEWYDA
Ga0335031_0000020_170895_171146	F007583	AGGAG	MELNSKQNTTSSSEGVANVRYGVYNQPAPVSGKSIADVRQQFSKLWGISGDAIAYKGKDKLDENYIIQPGDNVEFHRRAGEKG
Ga0335031_0000020_28474_29244	F001360	AGGAG	MSLAKFRKVGTKTGSGRFVVSEGIAPAAYLLPHVGLPTWYADSEDDRFEIVIPKGTILSVVADANGDARVVPANGTSSSVTWGDVTSGWNPLDGATPSYSSGATDTVAVAARSIPVGVAQYDLYRPFDKGTSQGAGFITHGYVEYPMVEGVNANVTVGSLVRADHMGRPVLAAVTDFLASSSVYSYLQVGKVVEVETFATNYDDGLLSYMQLPSDPGALKTVFELTRSGAFSGKLGIRSNLDVHNVKGAFRVNLTL