NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335030_0042549

Scaffold Ga0335030_0042549


Overview

Basic Information
Taxon OID3300034103 Open in IMG/M
Scaffold IDGa0335030_0042549 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3433
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012016Metagenome284Y
F014840Metagenome259Y
F066489Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0335030_0042549_1227_1409F014840GAGVIPFSYAIIDDEGEVIRKHRWSVKEAKWFTENNPDVKVVKLDKPKEVKEDLFELVGECLF
Ga0335030_0042549_311_550F012016AGGAGMKDPYAWAIEEFNSHGNLVWSSIMQTRPKELSWIKDLPTKKHNIVITPLYKCEEKAEKITGIKSYRESTQRLVDANNGL
Ga0335030_0042549_531_719F066489N/AMLIMVFNTGCATVATSVATQAGVQVIGEQYLITQNKPAIRCNLYNVIKGNKMCRVYRQYRRG

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