Scaffold Ga0335030_0042549

Overview

Basic Information

• Taxon OID: 3300034103
• Scaffold ID: Ga0335030_0042549
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3433
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012016	Metagenome	284	Y
F014840	Metagenome	259	Y
F066489	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335030_0042549_1227_1409	F014840	GAG	VIPFSYAIIDDEGEVIRKHRWSVKEAKWFTENNPDVKVVKLDKPKEVKEDLFELVGECLF
Ga0335030_0042549_311_550	F012016	AGGAG	MKDPYAWAIEEFNSHGNLVWSSIMQTRPKELSWIKDLPTKKHNIVITPLYKCEEKAEKITGIKSYRESTQRLVDANNGL
Ga0335030_0042549_531_719	F066489	N/A	MLIMVFNTGCATVATSVATQAGVQVIGEQYLITQNKPAIRCNLYNVIKGNKMCRVYRQYRRG