NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335030_0022643

Scaffold Ga0335030_0022643


Overview

Basic Information
Taxon OID3300034103 Open in IMG/M
Scaffold IDGa0335030_0022643 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4813
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000468Metagenome1102Y
F053297Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0335030_0022643_1599_2846F000468GGAMSDFTPDWKLTVGGVDYTNITISDVQHQAGRSDIYQQALPSYMQVTLVALNNQTLPFDINDSFDLQVKDSTGSYVSLFGGDLTDVTVGILQTGAAATVVQYTLLAMGSLARLTKEIFNDNISQDEDGNQIYEILISVLLGTWNDVPAATTWATYNATETWANAQNLGLGEIDQPGLYTMSSQSNVTDTIYNVISDIASSAFGYIYEDNAGNIGYADADHRQNYLLVNGYVELDARHALGAGLSTIMRSADVRNDIYINYGNNYNSQVDATDAASIALYGYKAETINSRVHGATDAQAIADRYIAQRAYPIPAFQSITFPITNPEIDNADRDDLLAVFMGMPVHIQNLPNQISGGDFEGYVEGWSWSTRFNELFLTINVSPVAFSQVAMRWNITPVTEAWNTLSNTLTWEYATIVS
Ga0335030_0022643_487_702F053297GGAGMTKSKPQIKIVNCETGDEIIRDANVDEIAQMAIDTANATATKAEAEAKEIAKSAILDRLGLTADELKTILG
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