NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335029_0016822

Scaffold Ga0335029_0016822


Overview

Basic Information
Taxon OID3300034102 Open in IMG/M
Scaffold IDGa0335029_0016822 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5597
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002267Metagenome / Metatranscriptome576Y
F039630Metagenome / Metatranscriptome163N

Sequences

Protein IDFamilyRBSSequence
Ga0335029_0016822_4894_5586F002267N/AMTGALAVMASYGGSSLPTLVYDLDAANYSAVPVNGTSDATGTYTLSVANAGGSITWQSSNGGVFRKSNNVGTDVIYGGPNYVTGQSYTVFMAYKRIATADGRLLNTQSEASKDWLMGLYNGHDQTFYPNFAVNLPSSGADLFWHLDWATWNTSTGLGQLYSATSSSPTGVLFSATNAGGGGFDQLRLFSRSSGSEVQTADIGFIKVYNGVLTLANVQSLYTTYRARFGYP
Ga0335029_0016822_994_1224F039630AGGMFHPLESDLSLLKDQDVENKLIELNKKYHAAARLGSRDLLTQLSTFITIYRQELAKRHAEKMKSTDSDLGQLINVD
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