Scaffold Ga0335029_0011794

Overview

Basic Information

• Taxon OID: 3300034102
• Scaffold ID: Ga0335029_0011794
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6739
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (9.52%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021979	Metagenome	216	Y
F067472	Metagenome / Metatranscriptome	125	Y
F088902	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0011794_1632_1955	F021979	N/A	MLTIENINILNSKFAGTPEWQIGEMFIGEQNYIFQIHKRVGEWIIGGVKHSELTIRLHRVKVIDRYVMETGLVKQNYHGRSAYSIENMRTINDFTLCLDNHIKTILR
Ga0335029_0011794_1933_2268	F067472	GGA	MLTIDNIQNIEGKEFQMSSGQKYIIGIVRAYYDHYSFGVFPLKENNVASIKDGIVYRLNRSRQNSRGYEMTSANSINPIVYVKPENLTLDNFVLELHIQTSIKVYANNRKH
Ga0335029_0011794_4198_4668	F088902	N/A	MPHIPTPPPMTLSQRIQTLQGITGNVSTYSSHSLQQAILDAQQIRDIAIEQAKKVLQEFMEQEQQKRKTILTIENIDKIKGHDYSESLKVMGVLEFENHYEFTLVGTNSNQVETILLHRRQTTDKRYIMEYKGQTLWVDKDRLSTIAGIIECMREV