NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335029_0008311

Scaffold Ga0335029_0008311


Overview

Basic Information
Taxon OID3300034102 Open in IMG/M
Scaffold IDGa0335029_0008311 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8086
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (79.17%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F003393Metagenome / Metatranscriptome489Y
F029439Metagenome / Metatranscriptome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0335029_0008311_1922_2044F000447AGGMGYIEIFRLDEKGAGWVDLSETTPDELLTLELGLFQEGAL
Ga0335029_0008311_280_495F029439AGGMTTLNTITLEPSHAMASSNTGNPMVFRNTVGNYISRKAYLEMLVSSQGVISHKYLSPNESRWVMSNMKESN
Ga0335029_0008311_3804_4049F003393N/AMRLRLNKMDDTIDVMDYVKVDILTAGQLEVDDLILVNNEVVSIVEIISLADGYTLEVINDFGEREIIEVGEYEQFDLMMLQ
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