NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335029_0007578

Scaffold Ga0335029_0007578


Overview

Basic Information
Taxon OID3300034102 Open in IMG/M
Scaffold IDGa0335029_0007578 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8503
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (57.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039635Metagenome / Metatranscriptome163N
F043397Metagenome156N

Sequences

Protein IDFamilyRBSSequence
Ga0335029_0007578_4270_4740F043397AGGAGMPRYAVYIPFNYSYGGESVDEEFDTIVKADNEKDAIQEAITELEGEYVIKTLNSDEITVEEVPEFPSFDEWEETYTALKNPHAYEGEQGLGEIMFDTDGDEYQTVRGFDSSKVWTVRSTEYGLILTAGLGVVDRFGYILSEEPVTEEDKDKAFVID
Ga0335029_0007578_703_996F039635AGGAMTEAQANKIKIKVEVFNELYAPITLRFQMFSTSENNWAVTITYNYTENEWMTFVGLGSSYNQINDKLSGFQFGLEAVEAYQEEHGNLKFSQSDAPLG
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