Basic Information | |
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Taxon OID | 3300034102 Open in IMG/M |
Scaffold ID | Ga0335029_0005262 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10190 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (70.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F020647 | Metagenome / Metatranscriptome | 222 | Y |
F026879 | Metagenome | 196 | Y |
F027772 | Metagenome / Metatranscriptome | 193 | Y |
F030428 | Metagenome / Metatranscriptome | 185 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335029_0005262_1702_1920 | F030428 | AGG | MKSKNTYENLTRICGGNITPQALKQVLAEIEFQTTAVKQEFWQYMFEMGETFGDIQSFVVQDRELSKEKIYE |
Ga0335029_0005262_5793_5990 | F027772 | N/A | MIDNNKLAELETQIGLVHDIMRHTDAKDPRMESLRELLAVMYQELIKLQPPRDKLDKPLLSDDSL |
Ga0335029_0005262_644_1030 | F026879 | AGGAGG | MLRQLAVILLLSSNLALAQDLPKELYMPNESGGYIVLTTDACPNAGAVKLGYTYRAYATESDSEQPATHEGCWDSPSIADAPKLQGVRIIPLVNLWFDGDMATFPQTMFGPEKKRWNIAPTIEVKPNV |
Ga0335029_0005262_8943_9152 | F020647 | AGGA | MFETCVKQLVTITLDKPVTTEFYNGTLFVSTITEDQARRVFHALSKSLGLGKVQISPIGDTGEFAYDFV |
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