NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335029_0005262

Scaffold Ga0335029_0005262


Overview

Basic Information
Taxon OID3300034102 Open in IMG/M
Scaffold IDGa0335029_0005262 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10190
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (70.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020647Metagenome / Metatranscriptome222Y
F026879Metagenome196Y
F027772Metagenome / Metatranscriptome193Y
F030428Metagenome / Metatranscriptome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0335029_0005262_1702_1920F030428AGGMKSKNTYENLTRICGGNITPQALKQVLAEIEFQTTAVKQEFWQYMFEMGETFGDIQSFVVQDRELSKEKIYE
Ga0335029_0005262_5793_5990F027772N/AMIDNNKLAELETQIGLVHDIMRHTDAKDPRMESLRELLAVMYQELIKLQPPRDKLDKPLLSDDSL
Ga0335029_0005262_644_1030F026879AGGAGGMLRQLAVILLLSSNLALAQDLPKELYMPNESGGYIVLTTDACPNAGAVKLGYTYRAYATESDSEQPATHEGCWDSPSIADAPKLQGVRIIPLVNLWFDGDMATFPQTMFGPEKKRWNIAPTIEVKPNV
Ga0335029_0005262_8943_9152F020647AGGAMFETCVKQLVTITLDKPVTTEFYNGTLFVSTITEDQARRVFHALSKSLGLGKVQISPIGDTGEFAYDFV

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