Scaffold Ga0335029_0004708

Overview

Basic Information

• Taxon OID: 3300034102
• Scaffold ID: Ga0335029_0004708
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10804
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (65.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009885	Metagenome / Metatranscriptome	311	Y
F021109	Metagenome	220	Y
F066779	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0004708_1625_1798	F021109	AGG	MDTLNRIRAEQQARYAIEHEKAMERSPWIRESVNAYRNATPEQIAQIEAIVAKRAGK
Ga0335029_0004708_3017_3322	F009885	N/A	MYNSVIMTATDWAQFILTMLSIGAIIVGAIRWYIKVQIKPIAEAVEDIRAETKTNGGTSMRDEIKQIKVEQEEAKVLRKATSDKLDHMYDILLEYVSKNSK
Ga0335029_0004708_894_1181	F066779	N/A	VLDLQYKENQERFLIRKENKMFSLKYKIELDTNPRYPLSREFSTCLGVLMNTEQDANEYLDLLAQRGTILEVELVELKDYKPSNRVAYATTRSWE