NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335029_0002562

Scaffold Ga0335029_0002562


Overview

Basic Information
Taxon OID3300034102 Open in IMG/M
Scaffold IDGa0335029_0002562 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14491
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (57.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030096Metagenome186Y
F084231Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0335029_0002562_11502_12086F030096GAGGMVNFDVVMLWMQYIRNNPDNAYRFSENFWPSQIESKKWLLEHVTHMDRSIIIFGGWYGVLAQFIAHKFPDARILTTDLDSSCRHVFAAIDECYHDIVFRQHDMKNGMPINIHPDLVINTSSEHVTQEVYDAWWDSIPSGTKYIVQGNNLENHEHVRLANSLEEFLNINNIKEPEYAGMLKCGHFYRYMAVGYKK
Ga0335029_0002562_14131_14346F084231AGGAMVSITTEVEVYMDDFDDRDLIEELTDRGYYVSKSSGDIPVAQSLYDAWVYKTGNFEDLFRQFCQQSIGRSF
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