Scaffold Ga0335029_0001622

Overview

Basic Information

• Taxon OID: 3300034102
• Scaffold ID: Ga0335029_0001622
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17934
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004344	Metagenome / Metatranscriptome	442	Y
F028173	Metagenome / Metatranscriptome	192	Y
F045100	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0001622_13366_13533	F045100	AGGAG	MLYTIISDNFEAKEKGESITEKELLELGLDAEALVAGNHLKSNATIKPATVEETK
Ga0335029_0001622_14370_14648	F004344	AGGGGG	MDGLSVKVKTKDGFEGTYSLTPRIIVAFEQKYGKGFAKLLGEEQKLEHIYFLGHEILKANGKVVKPFGPEFLDDLISVELVANDSFESTEIA
Ga0335029_0001622_14777_15334	F028173	GGAG	MADEVIVLSGIKETLDALKEFDADAVKRFNKVINTELAGAERDARGLIDEDPPMSGWRKADAAKGRTRGGEGWPGWNANHIKGKIVKTKAQGKVRKGNYTTSAGALLNKSAAGAIFEVAGRKTKPGFGGGSSAQFLRTIGNRFGKASRVVWRVVDKDRTKIEANVNRALEQAKAELQKHLNRERA