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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034102 Open in IMG/M |
| Scaffold ID | Ga0335029_0000459 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 32733 |
| Total Scaffold Genes | 44 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 34 (77.27%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002260 | Metagenome / Metatranscriptome | 577 | Y |
| F011761 | Metagenome / Metatranscriptome | 287 | Y |
| F020635 | Metagenome | 223 | Y |
| F028717 | Metagenome / Metatranscriptome | 190 | Y |
| F042895 | Metagenome | 157 | Y |
| F058142 | Metagenome / Metatranscriptome | 135 | Y |
| F079592 | Metagenome | 115 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335029_0000459_14940_15134 | F020635 | AGG | MEFTLKQLSWIVIGSLGIGGTGYMSMNNKIDELSTKIAVVYNQMENQNKMLERIENKLNTLQGK |
| Ga0335029_0000459_22482_22805 | F079592 | AGGA | MTQEIEYTYKLYRDNEQLVVTVDPLVKDIEISIEKMMNMDIEELSDDNKHLFEMKILGLRTIHQFLGALQQENYLKEYKSGITSELKGKINIDVNERLDGLTQGTVH |
| Ga0335029_0000459_22807_23175 | F042895 | AGG | MSEFKGLIDKPDYVGHIKNFDKMVTELSPFMNEYEIDQCIGYMHTLKDTKYDINPSPEDCKTQLQIMLGQERFIELTQAWGQKNQKFLSVFGALKFKDKRTGEYYDGLDETDNPQDYEKVYW |
| Ga0335029_0000459_27874_28653 | F028717 | AGGA | MDNQNFVGNDVAPVTAQDSMSEAGEQNVNPGAIRKSTTQSLLTALSNASGTQFQSVEDALSYMARVGAQNNNAGNVQPSGQPKQQNVTNGRVTTNDLHEQFSKLQSDLAVKEQRLREKELDSDIQRAMGDRFDSDLVDYALNKVKNNIQWNDDGSYAIVNQKGQERYGSDGMPLTISGLVQEVAVGNPKLLKQSNSNSGSGLRPGQGSFTGALDEAVPDYSRDPAAFNAWANKNGLGKGTGLKGLGVSASVSSSSRKVL |
| Ga0335029_0000459_28686_29735 | F011761 | AGGA | MAYVLGGPNNEGDGFTTAISNFALRAMHESNGLVNFTNVVTPTQGQTFLVPNFAPITYQDYNANGTGGTYGTGNAVVQNPSLGQGTITATPAVAQTAFDIFLGWTTSFTLAATLGAELGESFAEKVDQRVTAAFLSFKATPGNLNYTATPADGFPRVLQLGAMEVIGATNTSGTWTDGFTSNSILDCIRLIKQNFKVARMPGTPVIVMDSNGDAQTQSAYTGGQVGSSLNRLLAELTGGAVSQSGGSNLSALGNELLSTGKIESVYGCMVIFTTFLQSASRTVVGQASLPVLVGAYMGDSAIFTVMKEGLQLKQGEVPGGLQIWLTGVGYFGSGVGDLRRGGAINILQN |
| Ga0335029_0000459_29787_30314 | F002260 | AGGA | MSVPYQRISNATVEDIMFYDPAAERRASALNVDWAPYFKVGSQEWLYKLEFGWWQKYCDTVLGAYYYANLPNGQLISSFNPSLLIKNDQTLIRLDTFGAILVFYQSLVTDVSNMNEVDVQNYEFAQKRCDDEWTKALQLMNFYDLYMDSPQGPTTKLEENWTADVDYFNGDRRYF |
| Ga0335029_0000459_30314_30766 | F058142 | AGGAG | MAEVTYSVLNAPTVTQQEIIDVIRRDIPKAWNIPIFDDFPSDSEVVRYGVYVSDVHMVSRNPHQLAIQYCGAIYHAYDEFNITYISYQDDPYNVAVNSIIANLVTSVKDDGVQLMDGYFERDFDQVRTYGPTQAEKHTWTFRMLRLEFNT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |