Scaffold Ga0335029_0000330

Overview

Basic Information

• Taxon OID: 3300034102
• Scaffold ID: Ga0335029_0000330
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38334
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (25.40%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015602	Metagenome / Metatranscriptome	253	Y
F028802	Metagenome	190	Y
F030766	Metagenome / Metatranscriptome	184	Y
F031491	Metagenome / Metatranscriptome	182	Y
F041189	Metagenome / Metatranscriptome	160	Y
F078724	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0000330_11004_11621	F031491	N/A	MFTTAHPPTRKRLTYQEYKALSQDEQKKYKAEILEDFREHHYRLIENLGISRLDFNMKMPFYDKQARNVVGIFSSEFKKEKGFYFELITNEFEPLDSSRTVYKIPYNPNFEEEYELNERGSYLVPLEELRIVNASSIAISGTSAILEDVPTKTVAAPKPSVAYKAPGPMEDALYQEMTIRDFYAIHTGKPVSSKSWLNELIKSQK
Ga0335029_0000330_14112_14384	F030766	N/A	MAKKFYAQKDVLGFPIPGTMMSGEKVPANLIEIPAQNVAPGAGQVAVPHPGDLRYFVRKDKSGKIIPNSLIISLKKPAGDVYEFKLIKAS
Ga0335029_0000330_28845_29240	F015602	N/A	MNLHFTGKYIKQNGRLEFSTLAASKQFELFVSHIPEGQIVEVFYEEQHDDGTLPQLAKLHVLIKQLSAHVGETVENMKLLVKDRAGLCIAREVSGKEYFLAKSFSECSKEELSLAIQAAMEIGENVGFTLW
Ga0335029_0000330_5199_5603	F028802	N/A	MNKSMMLVTGSWGNNKTFKMIPIEADCPYNEAIFDRDSKVLALIGKEKKQSMHMVAKLDDHGDVKTMKVGRRANGKDYAEERKTLESYYEYYIENPEDIKDIVNSFAINADVFDYAQYMEQAYTEAPSSNLITV
Ga0335029_0000330_5629_6189	F078724	GAG	MIDSLYTKYFQKSRSFLFPALGVKKTANFSPAGTYISINGIVEPEDMKLVCAYKENESEGYKIFEEQMLITNPLFSQVLHIRDYNLYLFDYQTYMDDWFNFMLGKYSKLSPVLKRAIKTYYGDTSSEYKYIESYLFPDRFYEVYAKLLDVDLYMLQKIGELCDPCDLKKETLKIPVEDLEILQKTT
Ga0335029_0000330_9672_10283	F041189	N/A	MFSTQGQEVKTGGGLAKSLQPGVVYAHINSGQLRTSNKGDKKSLELYLEGPELENFEGWSIDKDNPDGPKYKGQTGRVSATIWTDEFNNGNVSRNEIMYKLTMIATELGLRDELNRIQASSIEDWATQALNLVKGKKLYWFLKGTEEEYNGKTIIKLSLPKYKFVSAEEDKLDKFDKNNKYHYKALITRPVSSFEPATDDFEM