NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335029_0000060

Scaffold Ga0335029_0000060


Overview

Basic Information
Taxon OID3300034102 Open in IMG/M
Scaffold IDGa0335029_0000060 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)96445
Total Scaffold Genes168 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)134 (79.76%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003439Metagenome / Metatranscriptome486Y
F005558Metagenome396Y
F009065Metagenome / Metatranscriptome323Y
F019324Metagenome / Metatranscriptome230Y
F019636Metagenome / Metatranscriptome228Y
F021093Metagenome / Metatranscriptome220Y
F068486Metagenome / Metatranscriptome124Y
F096495Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0335029_0000060_19015_19641F021093AGGAGGVSNPFIIAEDLALKTHITGLTVSDEKNAARVVKVWFGYPDVEVRSQDFPFITIDLVDVVPANDRQHQGLVNDSDYRGTIAPIANKSFTYEMPVAYDLVYQVTSYCRHPRHDRTLMYKLADKFPSKYGKLAVPNFLGTETGYRSMFLDGFVKRDAVDGETGNRRLLRNVYMVRVISEMTPSQAASSVWAVDTVLINATTASIPIQYKPV
Ga0335029_0000060_35_400F068486GGAGGMASKVKPTDVTGRAREEQVAANAEALAERAGEMSMATATSKAKLDETIDATVPDRQTVIVESTIEVGGSKDDKVEIRVIEDIENMTLGAGNNYTFKAGQKYAVTKTVAQHLKEKGYLAGV
Ga0335029_0000060_52325_52690F019636GGAGMSGQQADGVYNRRAWSAPTADAPRPPQEYVGPFQSNQERLLSQSLAAWNMNGADIQQYVRPPLPQIKLFPPRFGYTEDEISIEDIIALPRNIATTQRNESDFSQTPNSTQSSSRNTLGGA
Ga0335029_0000060_53283_53489F003439AGAAGMTVRKARSENAELLEGATDGKYRKRRPNTTVDPGMGDQEVIKNRAGLHPYMNYGFINSEEPAKVNPGK
Ga0335029_0000060_64107_64250F005558N/AMSKDQESISWGELAELTHATQVERFNWCSCEEQEDFPYPDCPKEVSA
Ga0335029_0000060_67909_68067F019324GAGMLGYTKADLDDMVTAIESALTTVNDTDDPWLHGNLTMATVFLNGLWAEGYFD
Ga0335029_0000060_89773_90018F009065AGGMMFFNKKPQTWDKPFSEKVAKRVSKIPTAELEMWVDQAIYEVGRCLSGFSKSREQVFLEEARTGAEALHAVVEELYKRNTR
Ga0335029_0000060_92280_92591F096495AGGAGMALIRGQEVKAGPTQYPANPKMYNTIVVQAKSRFAKYPSPAAGHWVHAKYTQMGGKFVSSKREVDPRFRDYVKEEQDKKEAEQKKKVTKPVGRGMVAGESFRK

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