Basic Information | |
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Taxon OID | 3300034102 Open in IMG/M |
Scaffold ID | Ga0335029_0000060 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 96445 |
Total Scaffold Genes | 168 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 134 (79.76%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003439 | Metagenome / Metatranscriptome | 486 | Y |
F005558 | Metagenome | 396 | Y |
F009065 | Metagenome / Metatranscriptome | 323 | Y |
F019324 | Metagenome / Metatranscriptome | 230 | Y |
F019636 | Metagenome / Metatranscriptome | 228 | Y |
F021093 | Metagenome / Metatranscriptome | 220 | Y |
F068486 | Metagenome / Metatranscriptome | 124 | Y |
F096495 | Metagenome / Metatranscriptome | 104 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335029_0000060_19015_19641 | F021093 | AGGAGG | VSNPFIIAEDLALKTHITGLTVSDEKNAARVVKVWFGYPDVEVRSQDFPFITIDLVDVVPANDRQHQGLVNDSDYRGTIAPIANKSFTYEMPVAYDLVYQVTSYCRHPRHDRTLMYKLADKFPSKYGKLAVPNFLGTETGYRSMFLDGFVKRDAVDGETGNRRLLRNVYMVRVISEMTPSQAASSVWAVDTVLINATTASIPIQYKPV |
Ga0335029_0000060_35_400 | F068486 | GGAGG | MASKVKPTDVTGRAREEQVAANAEALAERAGEMSMATATSKAKLDETIDATVPDRQTVIVESTIEVGGSKDDKVEIRVIEDIENMTLGAGNNYTFKAGQKYAVTKTVAQHLKEKGYLAGV |
Ga0335029_0000060_52325_52690 | F019636 | GGAG | MSGQQADGVYNRRAWSAPTADAPRPPQEYVGPFQSNQERLLSQSLAAWNMNGADIQQYVRPPLPQIKLFPPRFGYTEDEISIEDIIALPRNIATTQRNESDFSQTPNSTQSSSRNTLGGA |
Ga0335029_0000060_53283_53489 | F003439 | AGAAG | MTVRKARSENAELLEGATDGKYRKRRPNTTVDPGMGDQEVIKNRAGLHPYMNYGFINSEEPAKVNPGK |
Ga0335029_0000060_64107_64250 | F005558 | N/A | MSKDQESISWGELAELTHATQVERFNWCSCEEQEDFPYPDCPKEVSA |
Ga0335029_0000060_67909_68067 | F019324 | GAG | MLGYTKADLDDMVTAIESALTTVNDTDDPWLHGNLTMATVFLNGLWAEGYFD |
Ga0335029_0000060_89773_90018 | F009065 | AGG | MMFFNKKPQTWDKPFSEKVAKRVSKIPTAELEMWVDQAIYEVGRCLSGFSKSREQVFLEEARTGAEALHAVVEELYKRNTR |
Ga0335029_0000060_92280_92591 | F096495 | AGGAG | MALIRGQEVKAGPTQYPANPKMYNTIVVQAKSRFAKYPSPAAGHWVHAKYTQMGGKFVSSKREVDPRFRDYVKEEQDKKEAEQKKKVTKPVGRGMVAGESFRK |
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