NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0080742

Scaffold Ga0335027_0080742


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0080742 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2530
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio cholerae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001805Metagenome / Metatranscriptome631Y
F023328Metagenome210N
F028786Metagenome / Metatranscriptome190N

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0080742_1074_2303F023328N/AMTVYTPTYRVTIAGVVQTSTTLEDGTITYGRNDFFEATQPSYCNIELLNLDGTSPVVELLDTVLIEVTDSTGAYIKLFTGEVSGVYNRFEGAGLGGKPNTLQIQAIGALGLLVKRYAGGVAYPEELDGARIQRILEETLFVAWEDISNTFTWNDFTTETWANYGVQGIDTIDAGRYEMLARSAQVQQAYELTDITQQSGLGYLYDTADFEIGYADAERRSENYTTNLIELDADLVNADIQTRLQTADIVNSVVIQYDDPVLEVVAQNDTSINNYGLLEEIRSTILAETVDATEQATNFVNYRGTPKTSLEAVSVNLAHSDMTNTVRDDLLAVSMDSLLYLDNIPVGLIPEGYFEGFVEGWTWTLGRKNLELTMSVSNSIYSTLDVQWEDYNALIQWQNLDNATRWLDVI
Ga0335027_0080742_184_417F001805AGGAGMMTKSKDEQIFVGNQDGNRIELTGSDKEAFIADRNARAQEAALLEAEYKAKQEARESAIKKLAEIAGLTKDELASIL
Ga0335027_0080742_36_206F028786AGCAGGMNLLQSFNYKQLSLAAIAFLAAWQATDFALDYRAVLGAVVAASMGAMNPNAKTKTK
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