Scaffold Ga0335027_0064887

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0064887
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2893
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053078	Metagenome	141	N
F078653	Metagenome	116	N
F091586	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0064887_1353_1895	F053078	GGA	MMRLDSLLSWFRDHQDSLPLVIHRHNLMDDGGVPAWTGDFATYLDHAAHATFAETEERKVHDGTAAEQATLLRVTIQRYKYPMHSALHTLKRCRAKNGEPKPHEIGVALIATRGDLTASQEWLMRKYPLMLHREIWLEAAERTLRLLHERYTETPRAIVRGKSDSQLNAEVTNAQASDQA
Ga0335027_0064887_1870_2277	F078653	GAGG	MPKHPTKPDRYAALETYVAACLPVLNLGNWKVTILTDVAPEDRYADIEPNDQAQTANLRVGNLFWAQKAEDQRLTIVHELIHLHLCRLDQTVDRLEPVLGSAAWAPWAAVYEDVYERATDAIAEILAPQVDLPSV
Ga0335027_0064887_799_1356	F091586	GGAGG	VIQIRSVNGEHLKRILSVNYPRLHAVAIPQMARALGIGKRTLYAYIQEERRVPEYIEERIINLWGEIPPSGWRTVEAKHLHTTKPPADPHLPQAQAVDLEVSADANWTEIAQASVIAVAEKLHGHTMGEWAGNPEMLDADGKPLDLVVECRRCGMLVAIDAGLREVNGFAWRAFCGSDNLWKGAR