NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0056921

Scaffold Ga0335027_0056921


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0056921 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3132
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F000903Metagenome / Metatranscriptome843Y
F009883Metagenome / Metatranscriptome311Y
F012452Metagenome280Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0056921_1344_1538F000403GGAGMSDFVEIIYPQEMMAKIMCNGEIVEEYKIEQCDKCSQLRRLDHFGYQKGYDKQDNIIWFCGDCR
Ga0335027_0056921_1535_2014F000903N/AMIDRIEEVQCMIAAIQHCHDRSADHSTRIVKNLSWFEYVAQIAESMAAELVVAKRLGYDYTPGVTWDKSKADVGQHIEVKWSANPASNLWIQDSDRHDRDIAVLVTGNSPKMHIVGWMPVAVAKKPRYRNQSQNNWSVPQINLQPIETLMRSNYAHPSI
Ga0335027_0056921_533_694F009883GGAGMDELSIVIMCLIAGAFWAVMSYSVGFKEGQRQGYTRGRAVSRHISHLNDKVGK
Ga0335027_0056921_694_1347F012452AGGTGGMAGFLENYEGNKERTDRWLKTFPQGRLEAHIIEFNAEKGYVLVQAKAWRNQEEKEPAGIDYAFGYREAFNPNMKRWFCEDTTTSALMRVMALVMGGTEKATKETMEQVKVNDATKPQDYDYWTTKFGDVPSFKTADEAEQSGIPSLGSSMDEIAKQLGGELVQEAPQCRHGHRVWRTGTSAKTGKDWANFSCVGKKPDQCDPLWYVFTSRGKWEPQV
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