 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034101 Open in IMG/M |
| Scaffold ID | Ga0335027_0054691 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3208 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008078 | Metagenome / Metatranscriptome | 339 | Y |
| F031407 | Metagenome / Metatranscriptome | 182 | N |
| F034112 | Metagenome / Metatranscriptome | 175 | N |
| F073276 | Metagenome / Metatranscriptome | 120 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335027_0054691_1115_1408 | F031407 | N/A | MTDKEKALIIIDLIAKITQEIIDKPMQRKRLLQMRGHLEKAVKLTGNGIKREWTRPPSLPLVSHAKAEPVPFKPSTKETNGDLLADNIPVTKKARRK |
| Ga0335027_0054691_1408_2289 | F034112 | AGGAG | MVIFNIGNKQIKYNYPETASDITLEQYIYFAKFLLPEHPKVELEAIQYMNERDAVYQKILPYAKKLKVITKDALQINVVCDLGKILQEQEVKDNVRRFLPPLIEQWNTLDKELTTRLEIMDEVWEAKERYPYMAKVVNYFTGIPLDACFGKVADSLELKYLVFIYSKIMSSINTPTETKYKQLYDFNGKVYTLPERLMEKSTLLEFTMAAQYDKAMNQVKNGDPGGLLNIMAVLLKPLGEDYSDEIFEQNKVDFLQMSLQTSYEVAFFLTKLSERYMLDLQTSMLQKAMANLN |
| Ga0335027_0054691_2483_2938 | F073276 | N/A | MSLVQLANIFEAATDAVQGLNGFSFGWPSDRVRSQIYTEEGENSTNIFPRVFFAVPTLTNNPVTRRDTYQVTLFFDDLLGYDENGDVDTTLQITKWSNLIAYAERFILELGTTKTTNSIPDQVNLVLDSFTSIQRLITVQATFNISIKSEC |
| Ga0335027_0054691_879_1115 | F008078 | N/A | MSQTPKEKADELFNHYYNLIQSIGGELGQEILVSILAKQCALFAAREVLKQKWNIEVAGSQDEYYFWEEVEHEIENIY |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |