Scaffold Ga0335027_0027471

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0027471
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4778
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005382	Metagenome / Metatranscriptome	402	Y
F007025	Metagenome / Metatranscriptome	359	Y
F065739	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0027471_2103_2483	F065739	GAG	MTRINHAVEQLTTADAYTVFEGLETIGLTVTLPDWHQPFPSQERIGAANPRKLDMVGLLHVSRTWYINGPVMDQWTISTLGGPVQVPAGTIIETQELPDQWKALKRESDPGKQEWWFYSNGRTGFC
Ga0335027_0027471_4262_4540	F005382	N/A	MDKTSLIKQFIFDAGSSIISVQFVKADGTVRKLQFNPRDSQEIKGTGHALKNPSIIRCRDFTIARNEGQGAWRSFDCERVVSIKSNGKELVF
Ga0335027_0027471_994_1149	F007025	AGGAG	MILIDYFTEACCKGTELLEGWYWYEDDGEGVGGPYEDEEAAVEAAQAGLKW