NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0025598

Scaffold Ga0335027_0025598


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0025598 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4960
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017790Metagenome238Y
F062476Metagenome130Y
F074408Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0025598_2706_2987F074408N/AMNNFIDVCKLLGNYNDKDVYLYMSSKYKSNSIFYSPNYYLLPKWANPESLTFMQAVKIINFRMKHKNSDNINVKFLMEESNNIDTLIQEIKEK
Ga0335027_0025598_3897_4052F017790N/AMDSICEDIKEDMHKIEEDSKKIDCYAILDLIGHCIQCFIDSVKCCFKIKIN
Ga0335027_0025598_4263_4958F062476N/AMSRSEMSSNLPVEITERIKNIDNIYKIVNTKLTPISKSYPLLSSDAPRVEIYFPNDAILNFYNAILEADIWFNHRGNAGGGAANNYVQSVYPPRYGLASLIQEFNVYLNGQTISKTSQYAYIHNWVRDWLQNFDVEMIDNGLNTVDDPSKLYSYQNTGGMKGYVIPRRGFPASNNVADLDINARLKNKYHMNLSESVGFFGEASSKIINTAMLGELKLEIIFTSQIASCILG

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