Scaffold Ga0335027_0020212

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0020212
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5662
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026257	Metagenome	198	Y
F048282	Metagenome / Metatranscriptome	148	N
F096925	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0020212_145_537	F048282	GGAGG	MRDKRLKDYLDRAKRILNLSHWEIKISADPPPDDAWADVEVSQNLYAATIRFSPGLWKEKPEEIRRVIAHELIHCHYAGVERLVEVVQDALGTTAGEIVEKIWDVESERGADSLSTAVAELLPLPTFGEK
Ga0335027_0020212_4314_4712	F026257	N/A	MRDGVPDLKISEWLAENAQYISRITLGKHKREHLTEPHERLRQNAINVMKKQAKTIKATGDLAGLVRDYVHSAVEEGLMTPTLAEGLRAQEMIDRRQEKGADRDIALTLAGILGGGATYAVLEAKEVKEIEG
Ga0335027_0020212_4733_5305	F096925	GGAGG	VVPRLKIRSQLPLVEKGGVLDDCGPSSCAAASSWVLSKEITAREGVAAKEKATGRKDKPGVADNATDLSEIIKTCKVLGANGRWARDWDDVVKSLKAGAAVVINVQAARFYPPQAISAWHKRFVGRHAGATYGHMAAAVWDKEFGFQFADPTFSGLKAEKYACIVTEKELKAIASSKGEAPYKRCVIIKK