NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0010626

Scaffold Ga0335027_0010626


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0010626 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7962
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004670Metagenome428Y
F005027Metagenome / Metatranscriptome414Y
F013185Metagenome273Y
F034929Metagenome173N
F035760Metagenome / Metatranscriptome171N

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0010626_4958_5437F035760GAGMKYTGYDKTATAKMAGTEKFVNLCSRRWGFTNLGTLVVREMRSGQGMSVHATARACDIGFKDTKEGRAAAVQAMQWFVKYYKELGIEEVHDYGGLINGTWQGWRCNRNGKPGWKKWTDTDNGGSKNGRWIHVELAPQSNGGHAEDGVALEAAWRALPKP
Ga0335027_0010626_5574_5897F004670GAGMTYTDLPLFRATDPETSRQISPIRVGTHRALLLEQYYYATLGLTDEEAGARAALAGHEIKGYWKRCSDLRTIGLIQDLGIRRALLSGSQGIVCGITQKGMDMVRGWA
Ga0335027_0010626_5932_6144F034929N/AMGVLLAMAQNDGQPTMIPTWGYIALRSKDKKTMVQVFTDLSTGLIVYTQVCTRAQSWHSWGPPTEVERVD
Ga0335027_0010626_6534_6767F005027AGGAMETSLGELIAKLTNLSHNLALELRFKDSSLVLEAVGALHAIPTLAEKVRDSWHPSLHDSGPSKGLNYLSTVKLAEDE
Ga0335027_0010626_994_1503F013185N/AMSLATSVEITGLKQALSELSKLDKSARFKAAAKIKASSPAMLEEGRKQFPSEIGVSMIRGWGNKGRLGYNKTAVDKGVQIMVGGRARGQGITPLVTLVQKNAAGAMFSQAGSKNNSDFSRLLTNTFGKPQRGLWRSRAFVAEQGTADIMKAVDEVIADANRALKARTSG
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