NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0007819

Scaffold Ga0335027_0007819


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0007819 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9319
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (7.69%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003291Metagenome / Metatranscriptome495Y
F007690Metagenome346Y
F019478Metagenome229Y
F022886Metagenome / Metatranscriptome212N
F025032Metagenome203N
F038234Metagenome166Y
F062757Metagenome130N
F087181Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0007819_28_327F003291N/AMISKEKMNSERLVSVFNQDELSSMMTAMAGYINTKRKQGRSTATDTMAFNKIVNALLMSNYMNATIMVNSKSNTMGVAEYKMSEAQYEAMYESDVRAHS
Ga0335027_0007819_3380_3655F038234N/AMLVIKNIESLKGTYVGHWKILYAGIENDTYLIKVLHDGSPFDMFNLMIGRVKTSNGDYLMYCQETGNRHYLPIESIKDSYTFIRFLIDELI
Ga0335027_0007819_3662_3997F062757N/AMLHIQNIRKLGGRRLFGGWIITAVGGNPNEPHYLLDIHCNGPIGNRIDGCTISLNRRGEVQRTMGRPVELAYFLYYNGERTDVCVTKDWILNPENFISQLKYIIKEYHNKR
Ga0335027_0007819_4766_5077F007690AGGAGGMLTIKNILKLQGQGIWDGWEVKLIYEGNHNDTYIFELHRQSAWGNGDCTIMLERTGHTHSDKLVYFFIYNSQRTDVCATADWLADKDNMIAKLEYILVNKHNL
Ga0335027_0007819_6106_6660F087181N/AMSFGEIVFAMVISGIVGLWIYAYIVSDEVGRILWDDTMLGWGWKKLFGDKKKAKQAPIPSFGHIPPPPAMPTAFNTSSLNVPHMNHTGKPLVIKNWDRLAGMATMVFGRRWIVVQAFYASSYEFTLQTGGMAKSVTFSIYGDMYDSHRVSVYCQGRTEIMDVGICKDPNRLLHEVTYTFNEKFR
Ga0335027_0007819_6690_6962F019478N/AMVGIMFWNRRFTCLQVHETDTNYRFQFDDSEIIGRYVWIEVSKIGRMDTDGDWTYSLNYMRCSQHLITAKWFENWKNVTKTFGDALKKQF
Ga0335027_0007819_7798_8103F022886GGAMITIKNWDKLTRMFRSQIDIGELELYYEITYYYPTLPSNEYYRITLSRISPPQHDHPHKDEYLMLCGVSEYWLNKKELEDVDKVYEAIVDVVVRHNIKVKV
Ga0335027_0007819_8924_9292F025032N/AMISIVKIIEGESNVDKFTYKQRDAGGVRPSYQNTKIVKQGSAGDYVKYNVMVMGKFGGTIYYNKADKTMIASGGESNTTFPPKRFKSIKDAIDYVGGNSTRSYNTNIPLDGMDTSFGTARYV

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