Basic Information | |
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Taxon OID | 3300034101 Open in IMG/M |
Scaffold ID | Ga0335027_0007819 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9319 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (7.69%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F003291 | Metagenome / Metatranscriptome | 495 | Y |
F007690 | Metagenome | 346 | Y |
F019478 | Metagenome | 229 | Y |
F022886 | Metagenome / Metatranscriptome | 212 | N |
F025032 | Metagenome | 203 | N |
F038234 | Metagenome | 166 | Y |
F062757 | Metagenome | 130 | N |
F087181 | Metagenome | 110 | N |
Protein ID | Family | RBS | Sequence |
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Ga0335027_0007819_28_327 | F003291 | N/A | MISKEKMNSERLVSVFNQDELSSMMTAMAGYINTKRKQGRSTATDTMAFNKIVNALLMSNYMNATIMVNSKSNTMGVAEYKMSEAQYEAMYESDVRAHS |
Ga0335027_0007819_3380_3655 | F038234 | N/A | MLVIKNIESLKGTYVGHWKILYAGIENDTYLIKVLHDGSPFDMFNLMIGRVKTSNGDYLMYCQETGNRHYLPIESIKDSYTFIRFLIDELI |
Ga0335027_0007819_3662_3997 | F062757 | N/A | MLHIQNIRKLGGRRLFGGWIITAVGGNPNEPHYLLDIHCNGPIGNRIDGCTISLNRRGEVQRTMGRPVELAYFLYYNGERTDVCVTKDWILNPENFISQLKYIIKEYHNKR |
Ga0335027_0007819_4766_5077 | F007690 | AGGAGG | MLTIKNILKLQGQGIWDGWEVKLIYEGNHNDTYIFELHRQSAWGNGDCTIMLERTGHTHSDKLVYFFIYNSQRTDVCATADWLADKDNMIAKLEYILVNKHNL |
Ga0335027_0007819_6106_6660 | F087181 | N/A | MSFGEIVFAMVISGIVGLWIYAYIVSDEVGRILWDDTMLGWGWKKLFGDKKKAKQAPIPSFGHIPPPPAMPTAFNTSSLNVPHMNHTGKPLVIKNWDRLAGMATMVFGRRWIVVQAFYASSYEFTLQTGGMAKSVTFSIYGDMYDSHRVSVYCQGRTEIMDVGICKDPNRLLHEVTYTFNEKFR |
Ga0335027_0007819_6690_6962 | F019478 | N/A | MVGIMFWNRRFTCLQVHETDTNYRFQFDDSEIIGRYVWIEVSKIGRMDTDGDWTYSLNYMRCSQHLITAKWFENWKNVTKTFGDALKKQF |
Ga0335027_0007819_7798_8103 | F022886 | GGA | MITIKNWDKLTRMFRSQIDIGELELYYEITYYYPTLPSNEYYRITLSRISPPQHDHPHKDEYLMLCGVSEYWLNKKELEDVDKVYEAIVDVVVRHNIKVKV |
Ga0335027_0007819_8924_9292 | F025032 | N/A | MISIVKIIEGESNVDKFTYKQRDAGGVRPSYQNTKIVKQGSAGDYVKYNVMVMGKFGGTIYYNKADKTMIASGGESNTTFPPKRFKSIKDAIDYVGGNSTRSYNTNIPLDGMDTSFGTARYV |
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