Scaffold Ga0335027_0007819

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0007819
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9319
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (7.69%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003291	Metagenome / Metatranscriptome	495	Y
F007690	Metagenome	346	Y
F019478	Metagenome	229	Y
F022886	Metagenome / Metatranscriptome	212	N
F025032	Metagenome	203	N
F038234	Metagenome	166	Y
F062757	Metagenome	130	N
F087181	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0007819_28_327	F003291	N/A	MISKEKMNSERLVSVFNQDELSSMMTAMAGYINTKRKQGRSTATDTMAFNKIVNALLMSNYMNATIMVNSKSNTMGVAEYKMSEAQYEAMYESDVRAHS
Ga0335027_0007819_3380_3655	F038234	N/A	MLVIKNIESLKGTYVGHWKILYAGIENDTYLIKVLHDGSPFDMFNLMIGRVKTSNGDYLMYCQETGNRHYLPIESIKDSYTFIRFLIDELI
Ga0335027_0007819_3662_3997	F062757	N/A	MLHIQNIRKLGGRRLFGGWIITAVGGNPNEPHYLLDIHCNGPIGNRIDGCTISLNRRGEVQRTMGRPVELAYFLYYNGERTDVCVTKDWILNPENFISQLKYIIKEYHNKR
Ga0335027_0007819_4766_5077	F007690	AGGAGG	MLTIKNILKLQGQGIWDGWEVKLIYEGNHNDTYIFELHRQSAWGNGDCTIMLERTGHTHSDKLVYFFIYNSQRTDVCATADWLADKDNMIAKLEYILVNKHNL
Ga0335027_0007819_6106_6660	F087181	N/A	MSFGEIVFAMVISGIVGLWIYAYIVSDEVGRILWDDTMLGWGWKKLFGDKKKAKQAPIPSFGHIPPPPAMPTAFNTSSLNVPHMNHTGKPLVIKNWDRLAGMATMVFGRRWIVVQAFYASSYEFTLQTGGMAKSVTFSIYGDMYDSHRVSVYCQGRTEIMDVGICKDPNRLLHEVTYTFNEKFR
Ga0335027_0007819_6690_6962	F019478	N/A	MVGIMFWNRRFTCLQVHETDTNYRFQFDDSEIIGRYVWIEVSKIGRMDTDGDWTYSLNYMRCSQHLITAKWFENWKNVTKTFGDALKKQF
Ga0335027_0007819_7798_8103	F022886	GGA	MITIKNWDKLTRMFRSQIDIGELELYYEITYYYPTLPSNEYYRITLSRISPPQHDHPHKDEYLMLCGVSEYWLNKKELEDVDKVYEAIVDVVVRHNIKVKV
Ga0335027_0007819_8924_9292	F025032	N/A	MISIVKIIEGESNVDKFTYKQRDAGGVRPSYQNTKIVKQGSAGDYVKYNVMVMGKFGGTIYYNKADKTMIASGGESNTTFPPKRFKSIKDAIDYVGGNSTRSYNTNIPLDGMDTSFGTARYV