Scaffold Ga0335027_0006532

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0006532
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10235
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (38.46%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046179	Metagenome	151	Y
F056323	Metagenome	137	Y
F072111	Metagenome	121	N
F093535	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0006532_4272_4580	F046179	AGGTGG	MMPQWETQALALITGAGVANEDAPWVLECIQKAADDIAEMDDADRFPLYMEYHANDKNALCNLDAETFADVLACLGIDLHRLETLWGKHLDPPTDEVDWSLE
Ga0335027_0006532_5091_5282	F072111	AGGAGG	MKKQAILAAAIFGHLFLFLFVDSLFEAPTKWKMWAFYGSSLLSVAVWAAYVIHEDDNPKGGAA
Ga0335027_0006532_6148_6342	F056323	N/A	MADDLKLPPAVVALWATDGYIPYVMREGMPLFDPVAVGTHIAKQLNELNKIDDEKQREHNSKDY
Ga0335027_0006532_9904_10206	F093535	AGGA	MIIDGITMVHRNKYLENMKKYQEIENLIADIWYQNPRWPSTFSVCCNGCGNQARGGRECIYCLERELSKLTSQEDARSFVSAVRQVLTAEESLREHSKPF