Scaffold Ga0335027_0004921

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0004921
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11745
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007110	Metagenome / Metatranscriptome	357	Y
F007305	Metagenome / Metatranscriptome	353	Y
F084821	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0004921_4071_4271	F084821	AGGAGG	MNWLDLYNFLYERANDINNPGSFPWQENVQVFDFETLEYYPTDFIQMPDNKISLSIDTSNANMEIV
Ga0335027_0004921_4923_5141	F007110	GGAGG	MNCVYCKNCVGVDRYEFLVETGRKIICKDCSVENRAVGFMNFEHKTAPSLVMVPANAKETLRILDRANRRAR
Ga0335027_0004921_5162_5620	F007305	GAG	MKIINKTIRKAYNNWNPCKAIRCYHFSAAFDGTKLICFTQNNPIKTHAGAYRIGEDFNLEKYKEFPYYHSESRLISKLLDKYNTIDTNWSVVVMRINRKGLILGSKPCENCNKLLNAVGLNEVYYSNDDGNFIDSVGNLIEGNQLTMPMIMV