Scaffold Ga0335027_0004604

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335027_0004604

Scaffold Ga0335027_0004604

Overview

Basic Information
Taxon OID	3300034101 Open in IMG/M
Scaffold ID	Ga0335027_0004604 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	12110
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (93.75%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F082625	Metagenome	113	N
F086853	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0004604_1726_2373	F086853	AGGGGG	VTLDELYDQMDLYGFEDFEDEQKLTLLNEAYFDVVTREPWPFLEVVSTFTAPSGTTQITNQSFSGSPTNVNTVLSFIDTTNDVVMTPERGDVIEKNYRINDLDTYPEHYYFVGEELFVYPSVKGSTTYRLFYTRTPVSATETTGTGAWFIPSRHHSIVLYGALVKAFLVNDDPQVAAFQNLFESRYQQMRNDLWVQQYDRTERVHIISDAYDWNY
Ga0335027_0004604_5627_6076	F082625	AGG	VQWVACDKRIRETSRVTGVPHATVAYWAKQWEKDGPPESMDAEIRKNAYEFVDHANRVRKQAMEKLEALIPDAEVKQLSAIATVVGIMDDKIRLAQGLATKRTETVHTLPTRDEMKELMSGFADGLVAAAEDRAAEVVSIEPLSVVVND

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