NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0003920

Scaffold Ga0335027_0003920


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0003920 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13087
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002489Metagenome / Metatranscriptome554Y
F003643Metagenome / Metatranscriptome475N
F063685Metagenome / Metatranscriptome129Y
F083720Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0003920_1105_1245F063685GGAMIIELDNYGFMLETEWCYVALSWQLLLTTALLITAYKIYKRKKITK
Ga0335027_0003920_4332_4577F002489AGGMENKDSSNLEDNLPMVNYIMLHRIYDLLTIMANHMVGPESVSKMVQYHDQGYLLGPIPSYTPNTEEEKEEEFQQDILDFEK
Ga0335027_0003920_529_744F083720AGGAMANLYTIEALLIGKTYNSKTLRGEIISAEKHPKAIWYGDNTETYLVEISPNSGFNNWGRKTFRTIAVKVGE
Ga0335027_0003920_8682_8915F003643AGGAGGLTKIKEDLNNDGRVTMQEKILAALASYGRHFLGAAIALYMTGNTDPGDLIKGGIAACLPVILKALNPNENSFGFTKK

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