NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0003385

Scaffold Ga0335027_0003385


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0003385 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14039
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (28.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000557Metagenome / Metatranscriptome1026N
F006503Metagenome / Metatranscriptome371N
F007111Metagenome / Metatranscriptome357N
F020667Metagenome222Y
F021095Metagenome220N

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0003385_10604_12967F020667N/AMSVTLIAYPTADFTTDLQAWNAFNDRADADGATSREDACFGCLFSTFATLYDQPELAYVLDTMGGTDIAVTYSIGDIEDVTKQRGSFSKTITLPDTPTNRACFAYAYNIQSFVGGFQPNKRIRAAMWEDGVQVFSGVLQLLSMAKIKGQVTYEVGLFTDNVSLFKAIEGNMLVNTAGVTGMNHTPTSGHVSGTWTASGAASSGYVYGVIDAAGFTDILNQGGGWFQAPWWRLGPSIYVKKMVDLIFAEAGFRYSSTFFNSTFFKKLVMPYAAGTMPTNLSGSNIFAASTGSITYLVNDNGTIDFQNDSTGPYYDRPGYWSTANSQFNAPVAPSRWNVEIGFVVSSTVANSLYTYSASIRDLSSSGDIVNIGPSVNGLTGKRYTIRFDNITAPANAAINIGFRVNSLTTNNFYTIPSGATVQWTCLENPSNIGVLDMRTALPADVKQSDLLQDLQKMFNLQFMPDPQDPKLLYIEPWKDFYASGVVDWSQKSDENQEQVLTNGDPNAYTNIVFKYKDMGDYLSKTYKQSYPLAREGYGGRIFNTSNFYGKGDKMVETLCGTLIPASFSTDKIVGRTWDIDGGLASGSVKPLQTGYRLAQYNLIEGQTEWAYQFGVSGNVALSVGILKMPFVSHIDNPYAPTVDLAFGQPRLVYYNAVNASGNTFVYTNNNLYNTYWLNYINETVSQEALQLELTMLLSSVDIYQLDFRKPIYYGGIRWRLIEIRDYLVGQMKPCRVTLRRILNLTEFVAKSTLPPRSDPSGLFNGPIDDDPIDPGYEPPVNPELPSEG
Ga0335027_0003385_3096_3377F006503N/AMDLQMTNDQFVIAQKHRKYWDQYVASLTMRLPPDAVGELQAILTAHGRPPTNWWCADCVKSALQYIYLQADLFAEANQNTITHSLNAPANPEQ
Ga0335027_0003385_8000_8569F000557N/AMKLQDLTIDQFQRIGAIEFSSVLGDYDKRAGVVAIVEGVDISLVREMPAKSVLKRYKAIISEWNALPALGYKRKFKAGGKWWIPTVFTDELTAGQLIELMDANTTDEKQLLQNLHRIMATLCREGGLFGFFPKKYDGAAHAERAELMKKHAKVGDVWGVVSFFLLSSESYLKVLSDYSKHLMTKAGDLT
Ga0335027_0003385_8777_9427F007111GGGGGMETTILANGKPVGKFGSGSMKGIDETALEGIGSVVGPKGGGKSPTHDVLVKWIERVIELAKKNLEAANANAGGTLSASIAPEDIELSAKQIVVAIMANPYWKYVDQGVHGRSSSYISARDSKFRYDKKIPPPQAIADWIANKGIPVVPTYSRKLERMRTKQEQGLVMGRSIAFAIRERGVEGTKFMSNALSPEMIDVLVNTIAETLGKSISVATKL
Ga0335027_0003385_9429_10607F021095N/AMATTVLSGSPLVATPVYNKMLFKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPSTNFGFFDVAKVVETLIAPTKPSLTQTGFVDHAGYYSGYRLDFMEEYGNTPVVQTGTVTTVSGVMGFAGNLEQLEFQDWSLSPYFRIGSSFNSVKPLTTPSAFTVYRGGKAWLAINATKFTAVSANDTYLVSGRVAYKGVNYDIAVSPSLSGTTDFNIQRFGCGPAQLSGTIAALSGAVEGDSYTVQFLANQGLGSVITTFTFGPCERFNSIPVHFQNKYGGIDSYTFTLKNRKRANITRQTFGYNSDVYATTTYDKVWAGEFDYVYALNSDWLTDAESAWLIEMVRSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL

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