Scaffold Ga0335027_0003385

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0003385
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14039
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (28.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F006503	Metagenome / Metatranscriptome	371	N
F007111	Metagenome / Metatranscriptome	357	N
F020667	Metagenome	222	Y
F021095	Metagenome	220	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0003385_10604_12967	F020667	N/A	MSVTLIAYPTADFTTDLQAWNAFNDRADADGATSREDACFGCLFSTFATLYDQPELAYVLDTMGGTDIAVTYSIGDIEDVTKQRGSFSKTITLPDTPTNRACFAYAYNIQSFVGGFQPNKRIRAAMWEDGVQVFSGVLQLLSMAKIKGQVTYEVGLFTDNVSLFKAIEGNMLVNTAGVTGMNHTPTSGHVSGTWTASGAASSGYVYGVIDAAGFTDILNQGGGWFQAPWWRLGPSIYVKKMVDLIFAEAGFRYSSTFFNSTFFKKLVMPYAAGTMPTNLSGSNIFAASTGSITYLVNDNGTIDFQNDSTGPYYDRPGYWSTANSQFNAPVAPSRWNVEIGFVVSSTVANSLYTYSASIRDLSSSGDIVNIGPSVNGLTGKRYTIRFDNITAPANAAINIGFRVNSLTTNNFYTIPSGATVQWTCLENPSNIGVLDMRTALPADVKQSDLLQDLQKMFNLQFMPDPQDPKLLYIEPWKDFYASGVVDWSQKSDENQEQVLTNGDPNAYTNIVFKYKDMGDYLSKTYKQSYPLAREGYGGRIFNTSNFYGKGDKMVETLCGTLIPASFSTDKIVGRTWDIDGGLASGSVKPLQTGYRLAQYNLIEGQTEWAYQFGVSGNVALSVGILKMPFVSHIDNPYAPTVDLAFGQPRLVYYNAVNASGNTFVYTNNNLYNTYWLNYINETVSQEALQLELTMLLSSVDIYQLDFRKPIYYGGIRWRLIEIRDYLVGQMKPCRVTLRRILNLTEFVAKSTLPPRSDPSGLFNGPIDDDPIDPGYEPPVNPELPSEG
Ga0335027_0003385_3096_3377	F006503	N/A	MDLQMTNDQFVIAQKHRKYWDQYVASLTMRLPPDAVGELQAILTAHGRPPTNWWCADCVKSALQYIYLQADLFAEANQNTITHSLNAPANPEQ
Ga0335027_0003385_8000_8569	F000557	N/A	MKLQDLTIDQFQRIGAIEFSSVLGDYDKRAGVVAIVEGVDISLVREMPAKSVLKRYKAIISEWNALPALGYKRKFKAGGKWWIPTVFTDELTAGQLIELMDANTTDEKQLLQNLHRIMATLCREGGLFGFFPKKYDGAAHAERAELMKKHAKVGDVWGVVSFFLLSSESYLKVLSDYSKHLMTKAGDLT
Ga0335027_0003385_8777_9427	F007111	GGGGG	METTILANGKPVGKFGSGSMKGIDETALEGIGSVVGPKGGGKSPTHDVLVKWIERVIELAKKNLEAANANAGGTLSASIAPEDIELSAKQIVVAIMANPYWKYVDQGVHGRSSSYISARDSKFRYDKKIPPPQAIADWIANKGIPVVPTYSRKLERMRTKQEQGLVMGRSIAFAIRERGVEGTKFMSNALSPEMIDVLVNTIAETLGKSISVATKL
Ga0335027_0003385_9429_10607	F021095	N/A	MATTVLSGSPLVATPVYNKMLFKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPSTNFGFFDVAKVVETLIAPTKPSLTQTGFVDHAGYYSGYRLDFMEEYGNTPVVQTGTVTTVSGVMGFAGNLEQLEFQDWSLSPYFRIGSSFNSVKPLTTPSAFTVYRGGKAWLAINATKFTAVSANDTYLVSGRVAYKGVNYDIAVSPSLSGTTDFNIQRFGCGPAQLSGTIAALSGAVEGDSYTVQFLANQGLGSVITTFTFGPCERFNSIPVHFQNKYGGIDSYTFTLKNRKRANITRQTFGYNSDVYATTTYDKVWAGEFDYVYALNSDWLTDAESAWLIEMVRSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL