NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0003305

Scaffold Ga0335027_0003305


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0003305 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14189
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082625Metagenome113N
F086853Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0003305_3315_3944F086853N/AMYDEMDLYGFDDFEDSQKLTLLNEAYFDIVTREPWPFMEKLLPSLVVPTNTEKITNNSFSGSPTDVGSVLSFVDLTNDTVMVPERFDVIEKMYRVNDLSSTPINYYFVGDELYVYPVTKGATTYRLAYIRIPERATTSSDTFLIPSRHHSIIVYGALVKAFLVNDDPQAAVFQNMFESRYQQMRNDVWVNQYDRTDRIHVVSDGYDWNY
Ga0335027_0003305_7396_7908F082625AGCAGGMAKSRVEWDDDSKAAAYVIWISNGKSVRQTARETGIPVSTISYWGKEWEKSGPPNNLNEKIANNVYEFIAHASSVRETAMRKLEELIPQAEVKQLSAIATVVGIMDDKIRLANGLATKRTETVHTLPSREDMRELMSGFSEGLVAAAEDRASEVVVIEASSVEINSDQPE
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