NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0002869

Scaffold Ga0335027_0002869


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0002869 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15142
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (73.08%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000468Metagenome1102Y
F001834Metagenome / Metatranscriptome628Y
F002357Metagenome / Metatranscriptome567Y
F013887Metagenome / Metatranscriptome267Y
F017290Metagenome / Metatranscriptome241N

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0002869_13049_13711F002357N/AMAFNLEDYEDVATLNKWFIANYPMGRSDLSVISHDPEKGYILIQSTLWRDSKDAAPAVSNVAFGSRETYIPNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMRKVETNSSFKEKLEARQNMYGKPGSKSAQIETILRDSFEADKKLEPVAWSVGDVVAEIGASTPNEPPACEHGHILKQGISKGGKPYYGYVCKAKQCDAKWAKLTANGKWYFEGGE
Ga0335027_0002869_4849_5235F001834N/AMPSTILSSIRTPLATALAGVAGNVYSFVPESVIPPAVVVVPDSPYLELETINKSTIHAKINFTITVAVAYNSNPASLDNIEQLIMSVLAVIPVGYIVSSVERPTVSQVGASTLLISDIRVSTYYTQTT
Ga0335027_0002869_5244_5651F017290AGGAGMATTVITGRDVGLSFTGGTDIQAQATNAILTKVNDRQVYQTMDGEAYKTVNVSGTFQLDMLADWGKANSVCEALWTAAETAPDTDISMTLTAASGAQFVFPVKPEFPTAGGSGVDAQTVSFTFTVSKGAVVETFS
Ga0335027_0002869_7840_9087F000468GAGGMTVWTPDWKLTVAGVDYTDIAISDIAHQSGRDDIYTQPNPSYLQVEIVALSGQTLPFAINDGLTLQVKNSLGTYVSLFGGNITDITVEVSNAGNIANVVSYKLLAMGALVRLAKEVYDSTLSQDFDGDQIFDLLSYSLTNSWNEVSAAQTWAAYDPTITWANAENVGLGEVDQPGLYEMENRGVDPDTIYNIASAIANSAFGYLYEDNEGNIGYADADHRQTYLADNGYTELSANTAIGAGLRTITKAADIRNDIYINYGNNFGSQKTATDTTSIAIYGYRSETVNSLIHDASNAQEVADRYISQRAYPSPAFDSITFPITNPEIDDNDRDALLGVFMGQPIHITDLPSQISNGAFEGYVEGWRWSTRFNELFLTINLSPVSFSQVAMRWNTVPGTEAWNTIDNTLTWEYATIVA
Ga0335027_0002869_9823_10086F013887AGGVNNYLFDAIRLLKPTAEFSFSDNDYSTIKWDVLEGDAPTEKQIDDAIKAVKAKEIADAKAQKDAKAAAQAKLAALGLTVEDLQALGL

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