Basic Information | |
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Taxon OID | 3300034101 Open in IMG/M |
Scaffold ID | Ga0335027_0002869 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 15142 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (73.08%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000468 | Metagenome | 1102 | Y |
F001834 | Metagenome / Metatranscriptome | 628 | Y |
F002357 | Metagenome / Metatranscriptome | 567 | Y |
F013887 | Metagenome / Metatranscriptome | 267 | Y |
F017290 | Metagenome / Metatranscriptome | 241 | N |
Protein ID | Family | RBS | Sequence |
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Ga0335027_0002869_13049_13711 | F002357 | N/A | MAFNLEDYEDVATLNKWFIANYPMGRSDLSVISHDPEKGYILIQSTLWRDSKDAAPAVSNVAFGSRETYIPNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMRKVETNSSFKEKLEARQNMYGKPGSKSAQIETILRDSFEADKKLEPVAWSVGDVVAEIGASTPNEPPACEHGHILKQGISKGGKPYYGYVCKAKQCDAKWAKLTANGKWYFEGGE |
Ga0335027_0002869_4849_5235 | F001834 | N/A | MPSTILSSIRTPLATALAGVAGNVYSFVPESVIPPAVVVVPDSPYLELETINKSTIHAKINFTITVAVAYNSNPASLDNIEQLIMSVLAVIPVGYIVSSVERPTVSQVGASTLLISDIRVSTYYTQTT |
Ga0335027_0002869_5244_5651 | F017290 | AGGAG | MATTVITGRDVGLSFTGGTDIQAQATNAILTKVNDRQVYQTMDGEAYKTVNVSGTFQLDMLADWGKANSVCEALWTAAETAPDTDISMTLTAASGAQFVFPVKPEFPTAGGSGVDAQTVSFTFTVSKGAVVETFS |
Ga0335027_0002869_7840_9087 | F000468 | GAGG | MTVWTPDWKLTVAGVDYTDIAISDIAHQSGRDDIYTQPNPSYLQVEIVALSGQTLPFAINDGLTLQVKNSLGTYVSLFGGNITDITVEVSNAGNIANVVSYKLLAMGALVRLAKEVYDSTLSQDFDGDQIFDLLSYSLTNSWNEVSAAQTWAAYDPTITWANAENVGLGEVDQPGLYEMENRGVDPDTIYNIASAIANSAFGYLYEDNEGNIGYADADHRQTYLADNGYTELSANTAIGAGLRTITKAADIRNDIYINYGNNFGSQKTATDTTSIAIYGYRSETVNSLIHDASNAQEVADRYISQRAYPSPAFDSITFPITNPEIDDNDRDALLGVFMGQPIHITDLPSQISNGAFEGYVEGWRWSTRFNELFLTINLSPVSFSQVAMRWNTVPGTEAWNTIDNTLTWEYATIVA |
Ga0335027_0002869_9823_10086 | F013887 | AGG | VNNYLFDAIRLLKPTAEFSFSDNDYSTIKWDVLEGDAPTEKQIDDAIKAVKAKEIADAKAQKDAKAAAQAKLAALGLTVEDLQALGL |
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