NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0001074

Scaffold Ga0335027_0001074


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0001074 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23749
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (74.51%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004362Metagenome / Metatranscriptome442Y
F032194Metagenome / Metatranscriptome180N
F046894Metagenome150N
F046896Metagenome / Metatranscriptome150N
F078379Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0001074_13212_13655F004362AGGAMTLDDRLRNWAWYVSGSVIPQPDSTCRSFEKNYIPELGNLYAPEEPHYEPDNQDGELIEQAVKGLPLELRKMLKARYISHPYASQNQLAHHLRISTKRFETDLHNAKKRLQDQLDKKAKSKDYSDMLKVSGEKDNREWDFRDIQSWN
Ga0335027_0001074_20008_20238F046896AGGAMNTTDRAKTLLGDEFFQELLQAQKNSFKSYIFSSAEHDVEGRERALVKLKALEEFEASIQSIAHNGEIEKKRVKVF
Ga0335027_0001074_4997_5203F032194GAGMEAFYRILKEVDIPSGQSMICEHFFASGWDAAIDALSLAYQRQFENDGVDTQLIRRDPQEPPADDDKE
Ga0335027_0001074_6356_6649F046894AGGGGGVNKYDSWLEEPYRQMAQADDHQEYVWTTYMKPGKPCDPMDLDNFQEYLADATADYAGAEKWKNLREYADKGEWEKFGRAIYFLVHDHIENKLIAEEE
Ga0335027_0001074_8271_8519F078379GGAVVDFSDENDGKPWVEVCEVFYDKNHEPYLYTARGVGVMGEDLEEVKQNLYKMLDCLNKPVLMKADFNKNIKVWMDADTDQTD

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