Scaffold Ga0335027

Basic Information
Taxon OID	3300034101 Open in IMG/M
Scaffold ID	Ga0335027_0001074 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034101 Open in IMG/M

Scaffold ID

Ga0335027_0001074 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23749
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (74.51%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

23749

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (74.51%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004362	Metagenome / Metatranscriptome	442	Y
F032194	Metagenome / Metatranscriptome	180	N
F046894	Metagenome	150	N
F046896	Metagenome / Metatranscriptome	150	N
F078379	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0001074_13212_13655	F004362	AGGA	MTLDDRLRNWAWYVSGSVIPQPDSTCRSFEKNYIPELGNLYAPEEPHYEPDNQDGELIEQAVKGLPLELRKMLKARYISHPYASQNQLAHHLRISTKRFETDLHNAKKRLQDQLDKKAKSKDYSDMLKVSGEKDNREWDFRDIQSWN
Ga0335027_0001074_20008_20238	F046896	AGGA	MNTTDRAKTLLGDEFFQELLQAQKNSFKSYIFSSAEHDVEGRERALVKLKALEEFEASIQSIAHNGEIEKKRVKVF
Ga0335027_0001074_4997_5203	F032194	GAG	MEAFYRILKEVDIPSGQSMICEHFFASGWDAAIDALSLAYQRQFENDGVDTQLIRRDPQEPPADDDKE
Ga0335027_0001074_6356_6649	F046894	AGGGGG	VNKYDSWLEEPYRQMAQADDHQEYVWTTYMKPGKPCDPMDLDNFQEYLADATADYAGAEKWKNLREYADKGEWEKFGRAIYFLVHDHIENKLIAEEE
Ga0335027_0001074_8271_8519	F078379	GGA	VVDFSDENDGKPWVEVCEVFYDKNHEPYLYTARGVGVMGEDLEEVKQNLYKMLDCLNKPVLMKADFNKNIKVWMDADTDQTD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335027_0001074

Overview

Ecosystem & Geography

Associated Families

Sequences