Scaffold Ga0335027_0000824

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0000824
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27151
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (13.46%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F039629	Metagenome / Metatranscriptome	163	N
F057211	Metagenome / Metatranscriptome	136	Y
F065767	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0000824_12911_13357	F065767	GGA	MTSLNQEQKDEIVRLYKLKVMNKNIATILNISRHIVNNYIYKDYLLTNERAKNTCSYMKDADKVIELYVKGLPYKEIMSFTGVKYHHLCEIIKLTPKRRIDPLSIKLVRQIESMVEENWRTCDIAKEMNLDYNRVSHWVRKARKEGVH
Ga0335027_0000824_15031_15270	F057211	N/A	MLKDHHFIFEQSGFSLELESFENEGIVLDLYFGNGKSLTLELYDCLTERFSDHYRTICAILDSFIIEQLENNVQLCFTK
Ga0335027_0000824_4944_5492	F001775	GAG	MRQLLDDERKRIAIIAFLIGVILTFVIYPKPEQETVYKYETVTKTDTLIVEVKDTVYVPKKWIKSQIIRDTVLIDFKPQISHFKTTLPFEYGNTYVSGEVLGEVLKMTATNDYKIPVVTNTITETKTETIVKKAKGIYIGVGVNSLIQPSASLSYLDNKYLFTYQFQPLQKVHQIGVSKKLF
Ga0335027_0000824_9337_9558	F039629	N/A	MIEALDEVSEIPFDVFWDKFIEARPGEYDKTYTQGIWLKMREANRVLAFGYLCRFGTDYKAPHIHLEVFDLPF