NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0000270

Scaffold Ga0335027_0000270


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0000270 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45802
Total Scaffold Genes73 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)57 (78.08%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010448Metagenome / Metatranscriptome303Y
F014843Metagenome / Metatranscriptome259Y
F075656Metagenome / Metatranscriptome118N
F086580Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0000270_12921_13337F010448GAGMKNGDISNVSSPQVVCVTDVVITLVEEVIGKLFLTKVSHKLGDIQLEGAHKLWKLSNDYGLSLELAGYAELGWTDELLEKAFEKLEREIVNPFNYWQLYADPAELIRKIPYRANLRGVVDVSNRVARYGSAGVELKNL
Ga0335027_0000270_27515_28090F075656GGGGGMLSNEQFAQLANQGGASRSFKTGKSPTGPGVMVSVPGAEKITNAPYTAEQAKSFKEEHATKATGDVYQGAWKTGGKIFADISVKHKTLPEARKAGVENKQIAGYDLGGTDVRRSQGGNVYFGRKVPGVESNPEFVASAHRTAEYERMEPKPKAQDFAEQSQISRGSTYKGKKISVNEVYATIAKNRRNRGV
Ga0335027_0000270_33356_33775F014843AGCAGGMLYYALNISNRVALMTSRTTADAEHWLNSHGIINYDDLIDRSFYLEGEDLKKRQFVMSRSRAPIELYVDSDPSMCAWVFEEQGLPAIMFMNPGYLPVERRPDAPKKVRKWDQIEESINRINIAKSKDAASPKDLEFWQD
Ga0335027_0000270_43739_44473F086580GGTGGMITQTKTKDSFYLERLKTKFNTKDAYWSVGETSTSIWQPHTRKSFEFLTETKLIDITFNEQIYKGFQLILIGFHYEFRTVLDLTGVPSPQYLADNQIGGYMKNVRSFVYHESIAYEIGGVGDTKQDLNWLGQSATLYMYGGDTDATKTIKKCQKKLDLLSQLVNVKDELISISNERASSYDTKNPYNINVGDQVFIQAHGRLRKGKIVSTTGSRFIVGYLTPSNHDDLKYKTLRLDSLWIPANP

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