Scaffold Ga0335027_0000270

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0000270
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45802
• Total Scaffold Genes: 73
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (78.08%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010448	Metagenome / Metatranscriptome	303	Y
F014843	Metagenome / Metatranscriptome	259	Y
F075656	Metagenome / Metatranscriptome	118	N
F086580	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0000270_12921_13337	F010448	GAG	MKNGDISNVSSPQVVCVTDVVITLVEEVIGKLFLTKVSHKLGDIQLEGAHKLWKLSNDYGLSLELAGYAELGWTDELLEKAFEKLEREIVNPFNYWQLYADPAELIRKIPYRANLRGVVDVSNRVARYGSAGVELKNL
Ga0335027_0000270_27515_28090	F075656	GGGGG	MLSNEQFAQLANQGGASRSFKTGKSPTGPGVMVSVPGAEKITNAPYTAEQAKSFKEEHATKATGDVYQGAWKTGGKIFADISVKHKTLPEARKAGVENKQIAGYDLGGTDVRRSQGGNVYFGRKVPGVESNPEFVASAHRTAEYERMEPKPKAQDFAEQSQISRGSTYKGKKISVNEVYATIAKNRRNRGV
Ga0335027_0000270_33356_33775	F014843	AGCAGG	MLYYALNISNRVALMTSRTTADAEHWLNSHGIINYDDLIDRSFYLEGEDLKKRQFVMSRSRAPIELYVDSDPSMCAWVFEEQGLPAIMFMNPGYLPVERRPDAPKKVRKWDQIEESINRINIAKSKDAASPKDLEFWQD
Ga0335027_0000270_43739_44473	F086580	GGTGG	MITQTKTKDSFYLERLKTKFNTKDAYWSVGETSTSIWQPHTRKSFEFLTETKLIDITFNEQIYKGFQLILIGFHYEFRTVLDLTGVPSPQYLADNQIGGYMKNVRSFVYHESIAYEIGGVGDTKQDLNWLGQSATLYMYGGDTDATKTIKKCQKKLDLLSQLVNVKDELISISNERASSYDTKNPYNINVGDQVFIQAHGRLRKGKIVSTTGSRFIVGYLTPSNHDDLKYKTLRLDSLWIPANP