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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034101 Open in IMG/M |
| Scaffold ID | Ga0335027_0000184 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 56543 |
| Total Scaffold Genes | 76 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 54 (71.05%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003688 | Metagenome / Metatranscriptome | 473 | Y |
| F004405 | Metagenome / Metatranscriptome | 439 | Y |
| F018928 | Metagenome / Metatranscriptome | 232 | Y |
| F022813 | Metagenome | 212 | N |
| F032149 | Metagenome | 180 | Y |
| F044481 | Metagenome / Metatranscriptome | 154 | N |
| F091304 | Metagenome / Metatranscriptome | 107 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335027_0000184_23170_23361 | F091304 | GAGG | MIVCKKCNGKVFVDRQYTSIQHIETYCIGCGLRKFFHPPKESEEGRWLLAKETLRAKNTITRL |
| Ga0335027_0000184_41612_42016 | F044481 | AGGA | MGKRRTQAELDGLLKFVLGLTLGSILFFTTMGILYALIFVEQPLTGQSENDKMFFNVLGSVATFITGTLAGILIGQSGAKDIMDAQLSNKEMDAKNTQADKKLESEIDEAKARRLNKPDGAMPEEQPIDTDWIK |
| Ga0335027_0000184_50942_51151 | F018928 | AGGAG | MIIKSLNTMEKIINKNKNLLWDGWDVIDLKESEVAKTSPMGIRVKDKWYLHRIYKPGRNGWDIPNKYKD |
| Ga0335027_0000184_51437_51667 | F003688 | GGA | MYTDIMRKAVHSITPPKGFGVTIIDNEHFLTVKLDEKKFLHMGHDDKISALQYVVKLKKALEHCGAIVLVTREAVK |
| Ga0335027_0000184_51664_51792 | F032149 | GAGG | MKKKIIILVLSTISILVAINLFFASRLSQLSDLDLFEIEEDD |
| Ga0335027_0000184_5408_5857 | F004405 | GGAG | MDACEVTDFMFPMKADIYFPILAQGGYGQPTKNWVYDRTITCNATSVGGLGSEDVKPDSFLKYENKLIARTKDDPRLSSNNANNATTNILITNIRDASDTTIYKETAGARSGKGTIYEVATVEPFTGPFGYTEYYKMLWRRAENQTVGD |
| Ga0335027_0000184_6539_7105 | F022813 | GGAG | MAILTDTGFPPTFLNRYILSELQHYELIAESEGLSPMIPAQFPTNIEDLYNDSIQIRQTESPILIVYDRLMRFRPTPFYLQKREQLIYFIYSTDVGKLIDTVRVISSALDREDSSAEDVNKYNINNPILDDNADISTPFNIMFHSTRVYQADESRDVAELASARTLFVNKLIVEYDYHVAVDSDSRYT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |