Scaffold Ga0335025_0166017

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0335025_0166017

Scaffold Ga0335025_0166017

Overview

Basic Information
Taxon OID	3300034096 Open in IMG/M
Scaffold ID	Ga0335025_0166017 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Oct2015-rr0098
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1274
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013403	Metagenome / Metatranscriptome	271	Y
F091623	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335025_0166017_3_959	F013403	N/A	LGARSAITVNGDVFYRAIDGIRSFIIARRSFTDWGNTPISGEMTPIVENDQTNLLWASSAVVFDNRLLMTSQPRFNSEGVIHKAISVLDMELITSMRKKAPPAWSGIWTGLNILQLVKTENAYGDACFAIARGSDDTIQIWEITKSERFDMNLSATPKKEIEWQVQTRAYNFEVPFGLKRLDSGDLFIDELEGDVSFNVTYRPDQYPGWIEWIDFAECATVTQCLDLCPITNFKPQYRPKMRFPTPSDLPCNATISTPARNLYEVQVMLTIMGYCRIKSLRVHAYDIQESSVGECRTVFPACTPLDVCDVNPLTYSSE
Ga0335025_0166017_970_1272	F091623	GGA	MPNLTLITLTPPSLPVGYCPLNYQTLANDIVSGTQATFNSSIGNSFFNYGASTPALNNQVYPWLDENGEWWVRVSGYWARKNPIPANGPERRIFVGTAADV

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.