Scaffold Ga0335025_0035786

Overview

Basic Information

• Taxon OID: 3300034096
• Scaffold ID: Ga0335025_0035786
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Oct2015-rr0098
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3340
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030424	Metagenome	185	N
F048951	Metagenome / Metatranscriptome	147	N
F064670	Metagenome	128	Y
F095380	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335025_0035786_20_229	F030424	N/A	MIDVNQFAELELRVNDLQNALARVTEERDNYKDTADSLFRELESCRATLVQANSDISRLRVYLAQGAEL
Ga0335025_0035786_2090_2338	F048951	AGGAGG	MKQKRVNKGYNYPASALLKEFPDDMWASTIGERLGVGRAAIQTWREGNTYLDQWRADKYACLLGKHPSEIWSNWFDEVELAS
Ga0335025_0035786_360_551	F064670	AGGA	MILSDKVAGIIKDLQVQVGIKDVQLNSAMRRIETLNLMMNELKNQVEELLVENDELREVIRDR
Ga0335025_0035786_977_1192	F095380	AGG	MGLNLVATNTTGATMSRDNELALDLFMLGYERNELVHMLNEATSLIESLRNELDSIKSELHTTQQELWGKQ